Leclercia sp. LSNIH3: C3F35_18360
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Entry
C3F35_18360 CDS
T05316
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
leh
Leclercia sp. LSNIH3
Pathway
leh03030
DNA replication
leh03410
Base excision repair
leh03420
Nucleotide excision repair
leh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
leh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C3F35_18360 (ligA)
03410 Base excision repair
C3F35_18360 (ligA)
03420 Nucleotide excision repair
C3F35_18360 (ligA)
03430 Mismatch repair
C3F35_18360 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
leh03032
]
C3F35_18360 (ligA)
03400 DNA repair and recombination proteins [BR:
leh03400
]
C3F35_18360 (ligA)
Enzymes [BR:
leh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C3F35_18360 (ligA)
DNA replication proteins [BR:
leh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C3F35_18360 (ligA)
DNA repair and recombination proteins [BR:
leh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C3F35_18360 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C3F35_18360 (ligA)
MMR (mismatch excision repair)
DNA ligase
C3F35_18360 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C3F35_18360 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
AUY40587
LinkDB
All DBs
Position
3778179..3780194
Genome browser
AA seq
671 aa
AA seq
DB search
MDTIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQRPDLITPDSPTQ
RVGAAPLAFFSQVRHEVPMLSLDNVFDEGSFLAFNKRVQDRLKQTDALSWCCELKLDGLA
VSILYENGVMTRAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLMQFKAWGLPVSNRVQLCDSPEAVLAFYRQVEADRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIDRLGLRIGDKVVIRRAGDVIPQVVNVVESERPEDTRAVEFPTHCPVCGSDVERVEG
EAVARCTGGLVCGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTPG
KLTGLDRMGPKSAQNVADALEKSKDTTFARFLYALGIREVGEATAAGLAAYFGTLEALEK
APIDELQKVPDVGIVVATHVFNFFSEESNREVIGQLLNEGIRWPAPQVINAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLTALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVI
DEAEMLRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggacacaatcgaacaacaacttaccgaactccgaaccacgcttcgccaccatgaatat
ctttatcatgtgatggatgcgcccgaagtgccggacgcagaatacgaccgtttgatgcgt
gaactgcgtgagcttgaagcgcagcgtcccgatttaattacccccgactcaccgacccag
cgtgtcggcgccgcgccactggcctttttcagccaggtgcgccatgaagtgcccatgctg
tcgctggataacgtctttgatgaggggagcttcctcgccttcaacaaacgcgtccaggac
cgtctgaagcagaccgatgccctgagctggtgttgcgagctgaaactggatggcctggcc
gtcagcattctgtacgaaaacggggtgatgacccgcgccgccacccgcggcgacggtacg
accggcgaagacattaccaccaatgtgcgtaccattcgtgccatcccgcttaagctgcat
ggcgataacattccggcacgtctcgaagtgcgcggtgaagtattcctcccgcaggccgga
tttgaaaaaattaatgaagaagcgcgccgcactggcggcaaaattttcgctaacccgcgc
aatgccgcagcgggttcactgcgccagctggatccacgcattaccgcaaaacgcccgtta
accttcttctgttacggcgttggcattctggagggaggcgagctgcccgatacccatctg
ggccgcctgatgcaattcaaagcctggggactgccggtgagtaaccgtgtgcagctgtgc
gactcaccggaagccgtgctggcgttttatcgtcaggttgaagcagaccgtccgacgctc
ggctttgatatcgacggggtggtgatcaaagtaaactccctcgcgcttcaggaacagctg
ggcttcgtcgctcgagcgccgcgctgggcggtggcctttaagttcccggcccaggagcag
atgaccttcgtgcgcgatgtggagttccaggtggggcgtaccggcgcgataacgccggtt
gcgcgactggagccggttcaggtggccggggtcctggtcagcaacgcgaccctgcataac
gccgatgagatcgaccgtctggggctgcgtattggcgataaagtggttatccgccgtgcc
ggggatgttatcccccaggtagtaaacgttgtggaatcagaacgtcctgaggacacgcga
gcggtagaattcccgacccactgcccggtatgcggctcagacgttgaacgcgtcgaaggt
gaggccgtggcccgctgtactggcggtttagtttgcggcgcccagcgtaaagagtcgctg
aaacacttcgtctcccgccgggcgatggacgtcgatggcatgggcgacaaaatcatcgat
cagctggtcgagaaagagtatgtccatacgcccgctgatctgttccgcctgacgccgggt
aagctgaccgggctggatcgtatggggccgaaatccgcgcagaacgtggccgacgcactg
gaaaaatccaaagacaccacttttgcccgcttcctttatgcgctgggtatccgcgaagta
ggggaagcgaccgcggcgggtctggcagcctattttggtacgctggaggcgctcgagaag
gcgccaatcgacgagctgcaaaaggtgccggacgtcggcattgtggtcgccacccacgtc
tttaacttcttctctgaagagagtaaccgcgaggtgatcggccagttgcttaacgaaggc
attcgctggcctgcgccgcaggtgatcaacgccgaagagatcgacagtccgttcgccggc
aaaacggtggtactgaccggtagcctgagccagctttcacgcgatgatgccaaagcgcgt
ctgacggcactgggggccaaagtggctggcagcgtgtcgaagaaaaccgacctggtgatt
gccggggaagcggcaggctccaagctggcgaaggcgcaggagctgggaattgacgtaatt
gatgaggcagagatgctgcgtctgttgggagagtaa
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