Leclercia sp. LSNIH1: C2U54_21670
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Entry
C2U54_21670 CDS
T05297
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lei
Leclercia sp. LSNIH1
Pathway
lei03030
DNA replication
lei03410
Base excision repair
lei03420
Nucleotide excision repair
lei03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C2U54_21670 (ligA)
03410 Base excision repair
C2U54_21670 (ligA)
03420 Nucleotide excision repair
C2U54_21670 (ligA)
03430 Mismatch repair
C2U54_21670 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lei03032
]
C2U54_21670 (ligA)
03400 DNA repair and recombination proteins [BR:
lei03400
]
C2U54_21670 (ligA)
Enzymes [BR:
lei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C2U54_21670 (ligA)
DNA replication proteins [BR:
lei03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C2U54_21670 (ligA)
DNA repair and recombination proteins [BR:
lei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C2U54_21670 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C2U54_21670 (ligA)
MMR (mismatch excision repair)
DNA ligase
C2U54_21670 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C2U54_21670 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AUU86452
UniProt:
A0AAD0DH39
LinkDB
All DBs
Position
complement(4387703..4389718)
Genome browser
AA seq
671 aa
AA seq
DB search
MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAAPLAFFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKHTDALSWCCELKLDGLA
VSILYENGVMIRAATRGDGTTGEDITANVRTIRAIPLKLHGENIPARLEVRGEVFLPQAG
FEKINEEARRTGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKAWGLPVSNRVQLCDSPEAVLAFYRQVEANRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIDRLGLRIGDKVVIRRAGDVIPQVVNVVESERPDDTRPVEFPTHCPVCGSDVERVEG
EAVARCTGGLVCGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTPG
KLTGLDRMGPKSAQNVADALEKAKETTFARFLYALGIREVGEATAAGLAGYFGTLEALEK
ATIDELQKVPDVGIVVATHVFNFFSEESNRDVIGQLLNEGIRWPAPVAINADEIDSPFAG
KTVVLTGSLSQLSRDDAKARLTALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVI
DEAEMLRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggactcaatcgaacaacaactcaccgaactgcgaaccacgcttcgccaccatgaatat
ctctatcatgtgatggatgcgccggaagtgccggacgcagagtatgaccgtctgatgcgt
gagctgcgcgagcttgaagcgcagcaccccgagttaatcacaccggactcgccaactcag
cgcgtcggggcggcaccgctggcctttttcagccaggtccgtcatgaagtgccgatgctg
tcgctggataacgtctttgatgaagagagcttcctcgccttcaacaaacgcgtccaggat
cgcctgaagcataccgatgccctgagctggtgctgcgagctgaagctggatgggctggcc
gtcagcattctgtacgaaaatggcgtgatgatccgcgcggccacccgcggcgatggcacc
actggcgaggacattaccgccaatgtgcgtaccatccgcgccattccgctcaaattacat
ggcgagaacattccggcacgtctcgaagtgcgcggcgaagttttcctgccccaggcggga
tttgaaaaaatcaacgaagaggcgcgtcgtaccggcggcaaaatcttcgctaacccccgc
aatgccgccgccggatcgctgcgccagcttgacccgcgtattaccgcgaagcgcccgcta
acgttcttctgctatggggtcggcatcctggaagggggcgagctgcctgatacccatctg
ggccgtttgctgcagtttaaagcctgggggctgccggtcagcaaccgggtgcagctgtgc
gactcgccggaggccgtgctggcgttttatcgtcaggtcgaagccaatcgtccgacgctg
ggcttcgatatcgacggggtggtgatcaaagtcaactctctcgcgctgcaggaacagctt
ggctttgttgcccgtgcgccgcgctgggcggtagcctttaagttcccggcgcaggagcag
atgacctttgtgcgcgacgttgagttccaggtgggccgtaccggggcgataacgccggtg
gcgcgtctggagccggttcaggtggccggggtactggtcagcaatgcaaccctgcacaac
gccgatgagatcgaccggctggggctgcgaattggcgataaagtggtgatccgtcgtgcc
ggggatgtgatcccgcaggtggtgaacgtagtggaatcagagcgtcctgacgatacgcgc
cccgttgagttcccgacccactgtccggtgtgcgggtccgacgttgagcgcgtcgaagga
gaggccgtagcccgctgtaccggcggtttagtctgcggtgcccagcgcaaagagtccctg
aaacatttcgtctcccgccgggcgatggatgttgacggtatgggcgacaaaattatcgac
caactggtagagaaagagtatgtccatacgccagccgatctgttccgcctgacgcccggt
aagctgaccgggctggatcgcatggggcctaaatctgcccagaatgtggccgacgcgctg
gaaaaggccaaagagaccacctttgcccgtttcctctacgcactggggatccgtgaagtg
ggcgaggcgacggcggcggggctggcgggctatttcggtacgctggaggcgctggaaaag
gcgacgatcgacgaactgcaaaaggtgccggacgttggcatcgtggttgctacccacgtc
tttaacttcttctcggaagagagcaaccgcgacgttatcggccagctgcttaacgaaggg
attcgctggcctgcgccggtggcgatcaacgccgacgagatcgacagcccgtttgccggc
aaaaccgtggtgctgaccggcagcctgagccagctttcacgcgatgatgctaaagcgcgt
ctgacggcgctgggggcgaaggtggccggcagcgtgtcgaagaaaaccgacctggtgatt
gccggtgaagcggcgggctctaaacttgccaaagcgcaggagctgggcattacggtcatc
gacgaagccgaaatgctacgtctgttgggagagtaa
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