Leishmania sp. Ghana 2012 LV757: 94178201
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Entry
94178201 CDS
T10390
Symbol
GH5_02696
Name
(RefSeq) hypothetical protein
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
leis Leishmania sp. Ghana 2012 LV757
Pathway
leis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
leis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
94178201 (GH5_02696)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leis03019
]
94178201 (GH5_02696)
Messenger RNA biogenesis [BR:
leis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
94178201 (GH5_02696)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
SMC_N
AAA_29
AAA_16
RsgA_GTPase
AAA_23
AAA_24
MeaB
AAA_15
AAA_33
Dynamin_N
ATP-synt_ab
MMR_HSR1
AAA_25
nSTAND3
FtsK_SpoIIIE
AAA_28
NACHT
Zeta_toxin
AAA_22
AAA_18
G-alpha
SRP54
DLIC
VapE-like_dom
AAA_30
DUF6079
Motif
Other DBs
NCBI-GeneID:
94178201
NCBI-ProteinID:
XP_067699252
UniProt:
A0A836LFA9
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Position
30:489284..490861
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AA seq
525 aa
AA seq
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MSREAIVEVEKVSFQYPDAPTASLRQVSVTTHRGDRVLVIGHNGSGKSTLLSLLAGRRKA
QSGRVRVLGRDPFDDTRMTQHISMMGAPWPPEAVFGNTVDRVTSPAPVPERRAIVADALH
LRLSRFVDKMSSGEKRRVQILHGMLNPAVVYLLDECSTDMDVAERRTVLELVRRECEAKD
GCCFYATHILDRIKGWATHLLLMEGGRVVAFTTVADITEPLEDYAFQFMSKRGRCARGVD
AVAAPSLASYGTFVAISPAFAALQAASTPAPPSSPTAVAPVTYWASGESGHEPGEVVVDC
ARLNYRNVFTDLSFQVFRGERVLLCGSNGSGKSTLLNMLGGKLFFDNRDGSLSVLGKRCY
DDMLLNGLVSYGGDWWTTAPGGEMHVRELLQLRTARAEHLRELLDVDMDWDVRRISTGEQ
KRVQLLLHLLEDKPIVLLDEATADLDVDQRHSLLQFLYEESVQRGVTVVYSTNIFGGLQG
WADAVVLLDRTMHAAHAVWRASEGQPISLDRVVDEIVALKAREVF
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgagaggccatagtggaggtggagaaagtctctttccagtaccctgatgcacct
actgcgtcgttgaggcaagtcagcgtcacgactcatcgcggggatcgcgttctcgtgatc
gggcacaacggcagcggcaagtcaacgctgctgtctcttctcgcaggtcggcgaaaagcg
caatcagggcgtgtacgcgtgctcggacgcgacccgttcgatgatacccgcatgacccag
cacatctccatgatgggcgcaccatggcctccggaggctgtgttcggtaacacggtagat
cgcgtgacttcgccggcgccggtgccagagcgcagggcaatcgtcgcagacgcgctgcac
ctacgcctctcccgcttcgtggacaagatgagctcgggagagaagagacgggtacaaatc
ctccatgggatgctgaaccccgccgttgtgtatcttctcgacgagtgcagcaccgacatg
gacgtcgcggagcggcgcacggtgctggaactggtgcgacgggaatgcgaggcgaaggac
gggtgctgcttctatgcgacccacatactcgaccgaatcaaaggctgggctacgcacctg
ttgctcatggaggggggtcgcgtagtggccttcacgacggtggcagacatcactgagccc
ttggaagactatgcgttccagttcatgagcaagcgcggccgctgcgctcgtggcgtcgac
gccgttgcggctccgtcgttggcgtcgtacgggacgtttgttgccatttcacctgcattt
gccgctttgcaagcggcatccacacccgcccccccatcctctccgacagccgtcgcgccg
gtcacgtactgggcgagtggggaaagcggccatgagcctggcgaagtagtggtcgactgc
gcgcgcctaaactataggaatgtgttcacagatttgtccttccaagtgttccgcggtgag
cgggttctgctgtgcggcagtaacgggtccggcaagtccaccttgctgaacatgctgggc
gggaagctgttcttcgacaaccgcgacgggtcgctctccgtgcttggtaagcgatgctac
gatgacatgctgctgaacggtcttgtcagctacggcggcgattggtggaccaccgcgcct
ggtggggagatgcacgtgcgtgaactgctgcagctccgaacagcccgtgccgagcacttg
cgcgagctgctcgacgtggacatggactgggatgtgcggcgcatcagcacgggagagcag
aagcgtgtgcagctgctcttgcacttgctggaggacaagcccatcgtactgcttgatgag
gcgaccgccgacctggacgtcgatcagcgccacagccttctgcagttcctttacgaagag
agcgtacaacggggagtcactgtcgtctactcgacgaacattttcggcggcttgcagggc
tgggccgacgccgtggtactgctggaccgaactatgcacgctgctcacgctgtgtggcgg
gcctctgaggggcagcccatctcactggaccgcgttgtcgatgaaatcgtagctctcaaa
gcgcgggaggtcttttga
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