Leptolinea sp. HRD-7: hrd7_28110
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Entry
hrd7_28110 CDS
T08293
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lek
Leptolinea sp. HRD-7
Pathway
lek03030
DNA replication
lek03410
Base excision repair
lek03420
Nucleotide excision repair
lek03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
hrd7_28110 (ligA)
03410 Base excision repair
hrd7_28110 (ligA)
03420 Nucleotide excision repair
hrd7_28110 (ligA)
03430 Mismatch repair
hrd7_28110 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lek03032
]
hrd7_28110 (ligA)
03400 DNA repair and recombination proteins [BR:
lek03400
]
hrd7_28110 (ligA)
Enzymes [BR:
lek01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
hrd7_28110 (ligA)
DNA replication proteins [BR:
lek03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
hrd7_28110 (ligA)
DNA repair and recombination proteins [BR:
lek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
hrd7_28110 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
hrd7_28110 (ligA)
MMR (mismatch excision repair)
DNA ligase
hrd7_28110 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
hrd7_28110 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
HHH_3
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
BCY18962
LinkDB
All DBs
Position
complement(3031488..3033521)
Genome browser
AA seq
677 aa
AA seq
DB search
MSIGIERKRLEQLKKELNFHNYRYHVLDSPVISDAEYDRLLVELKTIEADHPEWITPDSP
SQRAGAAVSDKFNKLAHPHPILSLANAFNTDDIRSWVERISKLDERVLNAEFVVEPKIDG
LTVVLHYEDGVFVRGATRGDGEIGEDITANLRTIRTLPLRIPVEENGPIPPHRLVVRGEA
FIYLKDFQELNQRLIEAGEKTYQNPRNTAAGSLRQLDSTLTAKRPLALLTYDIVEADGPI
PRKQWDLLNYLKAMSFPVSDQVEFCPNLEAVIKACEKRKETRDLLSFEVDGAVIKINDLE
LAASLGFVGKDPRGAMAFKFPAREVTTVLNDIGVAVGRTGVLTPYAILEPVEIGGVIVKQ
ATLHNFDFIAEKDIRIGDRVLLKRAGDVIPYVMGPVIDARKGGEVCYKPPSVCPTCHEPV
EHFNDEVAWYCVNAACPAQLVRNIEHFVSRIAMDIAGCGIKIVEQLIEAGLVKDPSDLYG
LKKEDLLNLEGFAEKKADNLLEAIAASKRQPLNRLITAIGIHGVGEVMAADLAKKYPDLE
ALSKAGQAELMTIEGVGPNIAEAIVDWFSVEGNRQLIRKFKQYGVWPVSDISTSKPAGPQ
PLDGLTFVVTGTLPTFTRDGAREYIQKFGGKVSESVSKKTSYLVLGENPGSKLDKARELG
VPVLDEGGLRRLAGEKA
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgagtatcggaatagagcggaaaagattggaacagttgaaaaaagaattaaattttcat
aattaccggtaccatgtgctggactcgccggtgatcagcgacgcggaatacgaccggctt
cttgtggaattaaagacaatcgaagccgatcatccagaatggattaccccagattccccc
agtcaacgtgctggagcggctgtttcagataaattcaataaactggctcatccgcatcct
atcttaagcctggcgaatgcttttaacacagatgatatccgttcctgggtggaacggatt
tccaaattagatgaacgtgtgttgaatgcggaatttgttgtggaaccaaaaattgatgga
ttgaccgtggttttgcattatgaagatggtgtttttgtccgcggtgccacccgtggtgac
ggtgaaattggtgaagatataacagctaatctgcggacaatccgaacgctgccgttgcga
attccggttgaagagaatggtcccataccaccgcatcgattggtggtacgaggtgaagct
ttcatatatctcaaagattttcaggaattaaaccagcgtttgatagaggcaggagagaag
acatatcagaatccacgcaataccgcggcaggctctttgcgacaattggactcaacatta
acagcaaaacgcccgctggcattgcttacatacgatattgttgaagcggatggaccgatt
cctcgaaaacaatgggatctgctgaactatctgaaggcgatgagttttcccgtttctgat
caagtggagttctgcccgaatctggaagcggtgattaaagcctgtgagaaacgtaaagaa
acccgtgatttactttctttcgaagttgacggcgcggtgatcaagatcaatgaccttgaa
ttggccgcgtcactgggatttgtgggaaaagatcctcgcggggcaatggctttcaaattt
cctgcccgcgaggtgacgacggtgctgaatgacatcggggttgctgtaggacgaacggga
gttctcactccatacgccattctggaaccggtagagatcggaggcgtgatcgtcaagcag
gctacgttgcataattttgactttattgccgaaaaggacatccgtattggggatcgcgta
ctgttgaaacgggctggggatgtaattccctatgtgatggggcccgtaatagacgctcga
aaaggtggtgaagtatgctataaaccaccctcggtatgcccgacatgccacgaaccggta
gaacactttaacgatgaggtagcctggtattgtgttaatgccgcctgtccggctcaactg
gtgcgaaacattgaacattttgtatctcgtattgcaatggatatcgccggatgcgggatt
aagattgttgaacagttaatcgaagcaggacttgtaaaagatccgtctgacctttacggg
ttgaaaaaagaagacctgttaaatcttgagggttttgccgagaaaaaggcagataatctt
ctggaagcaatagctgcttcgaaacgacagccgttaaaccgtttgataacggccatcgga
attcatggtgttggtgaggtgatggctgccgatcttgcaaagaagtatcctgatctggag
gcgttgtcgaaagcagggcaggcggaattgatgacaatcgaaggtgttggaccgaacatt
gctgaggcaattgttgattggttttctgttgaaggaaaccgtcaactgatacgaaaattt
aagcaatacggcgtctggccggtaagtgatatttctacttcaaaaccagctggcccacaa
ccgctggacggactgacgtttgtggttaccggcacactgcctacttttacacgggatggt
gccagagagtatatccaaaaattcggaggaaaggtctctgagagcgtcagcaagaagacc
agctatctggtgcttggtgagaacccgggttccaaactggataaggctcgggagctgggc
gtaccggtgctcgatgaaggcgggttgcgccgcctggccggagaaaaagcatga
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