Lodderomyces elongisporus: PVL30_002829
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Entry
PVL30_002829 CDS
T01116
Symbol
smb1
Name
(RefSeq) Small nuclear ribonucleoprotein-associated protein B
KO
K11086
small nuclear ribonucleoprotein B and B'
Organism
lel
Lodderomyces elongisporus
Pathway
lel03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PVL30_002829 (smb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lel03019
]
PVL30_002829 (smb1)
03041 Spliceosome [BR:
lel03041
]
PVL30_002829 (smb1)
03032 DNA replication proteins [BR:
lel03032
]
PVL30_002829 (smb1)
Messenger RNA biogenesis [BR:
lel03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
PVL30_002829 (smb1)
Spliceosome [BR:
lel03041
]
Complex A
U1 snRNP components
Sm proteins
PVL30_002829 (smb1)
U2 snRNP components
PVL30_002829 (smb1)
Complex B
U1 snRNP components
PVL30_002829 (smb1)
U4/U6.U5 tri-snRNP components
PVL30_002829 (smb1)
Complex C
U2 snRNP components
PVL30_002829 (smb1)
DNA replication proteins [BR:
lel03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
PVL30_002829 (smb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Cloacin
Transferase
Motif
Other DBs
NCBI-GeneID:
5232566
NCBI-ProteinID:
XP_001525403
UniProt:
A5E144
LinkDB
All DBs
Position
3:complement(join(1377869..1378360,1378474..1378476))
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AA seq
164 aa
AA seq
DB search
MSSKLPINKKTKMSDLINYRLRILTVDNRTYVGSLLSFDKHLNLVLSDTEESRITKKSWI
EMKNKSQKEGNTNSLASTQTQASAPAQALNLNLNAPLFPTETEKPKFKPNLTRRHLGLII
LRGEQIVSLSIETGPLTDIKTRVSTGKGTSRPLKQPVSKLKKLA
NT seq
495 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgaaactacccatcaacaaaaagacaaaaatgtcagatcttatcaactatcgt
ctaaggattttgactgttgacaatcgaacgtatgttggttcactcttgtcgtttgacaag
cacttgaatcttgtattatctgacactgaagagtcaagaatcacgaagaagagctggatt
gagatgaaaaacaagagccagaaagagggcaataccaattcgctagccctgacacaaaca
caggcactggcaccggcacaggctttgaatctcaaccttaacgcaccattattccctaca
gagaccgagaaacccaaattcaagcccaacttaactagaagacacctaggtctaatcatt
ttacggggcgaacagattgtgagtctatcgatcgagactgggcctttgacagacatcaaa
acaagggtgtccactggcaagggaaccagccgacctctaaagcaaccggtgagcaagtta
aagaagctagcataa
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