Leptolyngbya sp. NIES-3755: LEP3755_08000
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Entry
LEP3755_08000 CDS
T04199
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
len
Leptolyngbya sp. NIES-3755
Pathway
len03030
DNA replication
len03410
Base excision repair
len03420
Nucleotide excision repair
len03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
len00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LEP3755_08000
03410 Base excision repair
LEP3755_08000
03420 Nucleotide excision repair
LEP3755_08000
03430 Mismatch repair
LEP3755_08000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
len03032
]
LEP3755_08000
03400 DNA repair and recombination proteins [BR:
len03400
]
LEP3755_08000
Enzymes [BR:
len01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LEP3755_08000
DNA replication proteins [BR:
len03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LEP3755_08000
DNA repair and recombination proteins [BR:
len03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LEP3755_08000
NER (nucleotide excision repair)
GGR (global genome repair) factors
LEP3755_08000
MMR (mismatch excision repair)
DNA ligase
LEP3755_08000
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LEP3755_08000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
RNA_pol_A_CTD
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
BAU10316
UniProt:
A0A0S3TYM0
LinkDB
All DBs
Position
complement(863508..865541)
Genome browser
AA seq
677 aa
AA seq
DB search
MDSVAQLTPEIQQRVQELKNLLQKASYEYYVLDAPTMDDAVYDRLYRELQTLESQYPELI
APDSPTQRVGERPASQFTSIKHNVPLYSLENAFGNEDLATWEQRWKKAAPDVTEYDYICE
LKIDGNALALTYENGVLVRGATRGDGITGEEITQNVKAIRSIPLRLNLENPPAIVEVRGE
AFLSLDTFEQINRDREKSGESLFANPRNATAGTLRQLDSKIVAQRQLDFFAYTLHFPGEL
KTQWEALELLKQMGFRVNPERQQCANLQEVQEYCDRWSIDRTQLRYMTDGVVIKINSLAL
QERIGFTQKFPRWAIALKYPAEEAPTILENISVNVGRTGAITPVAELKPVQLAGTTVSRA
TLHNRDRIAELDCRIGDTVIIRKAGEIIPEVLRVLKELRPTDAQPYEMPSHCPECGEAVV
KPEDEAVTRCINASCPAILRGALTHWASRDALDINGVGEKLVAQLVDSNLVQSVGDLYEL
SIEQLLTLDRMGKKSAEKIVSAIQHSKAQPWSRVLFGLGIRHIGSVNAQTLTQTFQKVEL
LAQATPEQIEAVPGFGSEIAQSVYEWFQNHGNQELIDRLRQAGVQLEGEAAPVAQVETAI
TGKTFVITGTLPTLKRDEAQALIQQAGGKVSDSVSKKTDYLVAGEKAGSKLDKAQSLGIS
VLSEADLLALIQGESLS
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggattcagtcgcgcaactcacgccggagattcaacagcgagtacaagaactcaaaaac
ctgttgcaaaaagcgagttacgaatattacgtgttagatgcaccgacaatggacgatgcc
gtttacgatcgcttatatcgcgaactgcaaacgctcgaatctcaatatccagaactgatc
gcacccgatagtccaactcagcgcgtgggtgagcgtcctgcgagtcaattcacttcgatc
aagcacaatgttccgctctatagtctagagaatgcgttcggcaacgaggacttagcgacc
tgggaacagcgatggaaaaaagcggctcccgatgtcaccgagtacgattacatctgcgaa
ttaaagattgacgggaatgcgttggctttaacttatgaaaatggcgttctcgtgcggggt
gcaactcgtggcgacggtatcacaggcgaagaaattacccaaaacgtaaaagccattcga
tcgattcctttgcgtctcaatctagaaaatcctccagcaatcgtcgaagttcggggcgaa
gcgtttctttccctcgatacatttgagcagatcaaccgcgatcgagaaaaatccggcgaa
tctctttttgccaatccccgaaatgcaactgctggaacattacgccaactcgattctaaa
attgttgctcaacgccaactcgatttctttgcttatacattgcattttccaggtgaactt
aaaacccagtgggaagcattggaactattgaaacaaatgggttttcgagtgaatccagaa
cgtcaacagtgtgcgaatcttcaggaagttcaggaatactgcgatcgctggtctatcgat
cgtactcaattgcgctatatgactgatggcgtagtgattaaaattaattctctcgcactt
caagaaagaatcggatttacgcaaaaatttccccgttgggcgatcgcgctcaagtatcct
gccgaagaagctcccaccattctcgaaaacattagtgtgaatgtgggacgaacgggagca
attaccccagttgccgaattaaaacctgtgcaattagcaggtacgaccgtttctcgtgcg
accttgcataaccgcgatcgtattgctgaacttgattgcagaattggcgacaccgtgatt
attcgcaaagctggcgaaatcattcccgaagtgttgcgggttctgaaagagttacgaccg
acagatgcacaaccgtatgaaatgccttctcattgtccagagtgtggcgaagctgtggtt
aaacctgaagacgaagctgtgactcgctgtattaacgcttcgtgtccagcaattttgcgt
ggagcattaacccattgggcgagtcgggatgcgttagatattaacggagtcggtgaaaaa
ctcgttgcacaattggtggatagtaatttggtgcagtcggttggagatctctatgaatta
tcgatcgaacaactcttaacgctcgatcgcatgggcaaaaaatccgctgaaaagattgtg
tcagcgattcagcactcgaaagctcaaccttggtcgcgagtcttgtttggtttaggaatt
cgacatatcggcagcgtgaatgctcaaactctgacgcaaacctttcagaaagtagagtta
ctcgctcaggcaacacccgaacaaatcgaagccgttccaggatttggctctgagattgca
caatctgtgtatgagtggtttcagaatcatgggaaccaggaactcatcgatcgattacgt
caagcgggtgtccaacttgaaggtgaagccgctccagtcgcacaagttgaaacggcgatt
acaggtaaaacgtttgtgattactggaaccttgccaactttgaaacgcgacgaagctcaa
gcattaattcaacaagcaggcggcaaagtgtccgattctgtcagcaaaaagaccgattac
ttagtcgcaggagagaaggcaggatcaaagcttgataaggcacaatctctcggaatttct
gtgctttcggaggcggatctgctggcattgattcaaggcgaatcgctatcatga
DBGET
integrated database retrieval system
