KEGG   Leucoraja erinacea (little skate): 129694202
Entry
129694202         CDS       T09122                                 
Name
(RefSeq) TNF receptor-associated factor 2-like
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
leri  Leucoraja erinacea (little skate)
Pathway
leri04010  MAPK signaling pathway
leri04137  Mitophagy - animal
leri04141  Protein processing in endoplasmic reticulum
leri04210  Apoptosis
leri04217  Necroptosis
leri04621  NOD-like receptor signaling pathway
leri04622  RIG-I-like receptor signaling pathway
leri04920  Adipocytokine signaling pathway
leri05132  Salmonella infection
leri05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:leri00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    129694202
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    129694202
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    129694202
  09143 Cell growth and death
   04210 Apoptosis
    129694202
   04217 Necroptosis
    129694202
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    129694202
   04622 RIG-I-like receptor signaling pathway
    129694202
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    129694202
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    129694202
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    129694202
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:leri03019]
    129694202
   04121 Ubiquitin system [BR:leri04121]
    129694202
Enzymes [BR:leri01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     129694202
Messenger RNA biogenesis [BR:leri03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     129694202
Ubiquitin system [BR:leri04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    129694202
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 TRAF3_RING zf-TRAF zf-C3HC4 zf-C3HC4_4 zf-RING_5 zf-RING_UBOX zf-RING_2 zf-C3HC4_2
Other DBs
NCBI-GeneID: 129694202
NCBI-ProteinID: XP_055486892
LinkDB
Position
Unknown
AA seq 495 aa
MVALVSGISPVDPIASSCLLCSACRSLLIKPKQTECGHRYCTACLENLFRTGNEADCYVC
QKKVLRSKVYLDRAAENDAHATTIRCTAHLEGCDWVGSLRNFLRTHRAKCDFHMVPCANV
AFGCQVFGPRREMELHESRECGWRMECCPHCETFCVHNMLEDHVATCGKQESCPHCGETD
LTKTELEQHCDPLLGACPKLKVACPFKEVGCSVQLPRHEMAAHLRSSQESHLLLLLSLAT
SLRPGAPVEGGGTSQDSARTPAGEGPEGEVVPGAGPGLHSLAGRADNLERWVCGLNKDLD
RYAQVIEVLQQKCLQYEQVIQGLQTKGGHGEGPGGSGPVSTDGVLVWKIKNFSAHLSAAK
AGQRPSFYSPHFTTHPFGYRMCCRIYPNGDGSGKGSHVSLFLTLVRGEYDEVLPWPFRQK
VTFMLLDQAGQKHLKESFSPDSLSGSFQKPRSHMNVASGCPTFAQHALLHKGPCQYLKND
TIYIKVLVDPIAVQM
NT seq 1488 nt   +upstreamnt  +downstreamnt
atggtcgccttggtgtccggcatcagcccggtggatccgatcgccagctcctgccttctg
tgctccgcctgccgctccttgctcatcaagcccaagcagaccgaatgtggccatcgctac
tgtacagcctgtctggagaacctcttcaggacaggaaatgaagcagattgctacgtttgt
caaaagaaagttctacgttctaaggtttacctggacagggctgcggaaaatgatgcccac
gccactacgattcgctgcacggctcacttagagggctgtgactgggttggatcactgcgg
aactttctgcgcacgcaccgtgccaagtgcgatttccacatggtcccctgcgccaatgtg
gcctttggctgccaggttttcggccccaggagggagatggagcttcacgagagccgggag
tgtggatggcggatggaatgctgtccgcactgcgagaccttctgtgtccacaacatgctg
gaggatcacgtggcaacctgtgggaaacaggagagttgccctcactgtggagagaccgac
ttaacaaagaccgagttggagcaacattgtgaccctctccttggcgcctgtcccaagttg
aaggtggcctgtccctttaaggaggtcggctgttcagtccagctcccacgacatgaaatg
gccgctcatctccgatcatcccaggagagtcatctcctgctcctcctctccctggccacc
agtctccggcccggggcacctgttgaggggggaggaacgtctcaggattctgcccggaca
ccggccggagagggtccggagggcgaggtggtcccgggggcagggcccggcctgcattcg
ctggccggccgggcggacaacctggagaggtgggtgtgcgggctcaacaaggacctggac
cgctacgcccaggtgatcgaggtcctccagcagaagtgcctccagtacgagcaggtcatc
cagggcctgcagaccaaggggggccacggcgagggtcccgggggctcggggcccgtcagc
accgatggagtcctggtgtggaagatcaagaacttctccgcccacctctctgcggccaag
gccggccagcgaccatcattctattcgccccacttcaccacccacccattcggctaccgg
atgtgctgccggatctaccccaacggagacgggtcgggcaagggaagccacgtctcgctc
ttcctgacgttggtgaggggggagtacgacgaggtcctcccctggcccttcaggcagaag
gtgaccttcatgctcctggaccaagccgggcagaagcacctcaaggagtccttctccccc
gactccctgagcggctccttccagaagcccaggagccacatgaacgtggccagcggttgt
cccacctttgcccaacatgccctcctgcacaagggaccttgccagtatctcaagaacgac
accatctacatcaaggtgctggtggaccccatcgcagtgcagatgtga

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