Leucoraja erinacea (little skate): 129695487
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Entry
129695487 CDS
T09122
Symbol
rigi
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
leri
Leucoraja erinacea (little skate)
Pathway
leri04622
RIG-I-like receptor signaling pathway
leri04623
Cytosolic DNA-sensing pathway
leri05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
129695487 (rigi)
04623 Cytosolic DNA-sensing pathway
129695487 (rigi)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
129695487 (rigi)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
leri04054
]
129695487 (rigi)
Enzymes [BR:
leri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129695487 (rigi)
Pattern recognition receptors [BR:
leri04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
129695487 (rigi)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C
RIG-I_C-RD
CARD_2
DEAD
ResIII
Helicase_C
AAA_22
AAA_19
PNMA
Helicase_C_2
HEWD
Motif
Other DBs
NCBI-GeneID:
129695487
NCBI-ProteinID:
XP_055488437
LinkDB
All DBs
Position
3:38883498..38923893
Genome browser
AA seq
916 aa
AA seq
DB search
MTAVDRENLKQWESYIIGILRPSYIHAFLVDFLPQVKVEEILSLEEKSCTTSAERFFESL
IKLEEAGWYRAFLDQLRAVGYTGLLNAMETFDFSEIEKLREYKDLLNRISPTIVSNIKPN
EVLNSMKCLLPRENEEIRKVSESKGDTAGAEKLLDCLQRSDQSQFFKEFQIAMDTYNYDA
VTNLLSSDADGLSDCSATTESVMQYSEEPEDMDTSSAPIIHTPNSQQISNDFKRMELRAY
QEELSESAIDGDNTIICAPTGSGKTIVALHIVERHLMDSADQNKRKVGFMATTVPVFQQQ
LELFKNHFEMTKFKVYGICGDVAGNCPVEMFVEMNDIIILTPQILLNFLQVGYISSLSIF
TLLIFDECHNTTKNHPYNVLMRKYRDLKLGLVASAFPQIVGLTASIGVGDAGSVKDAMSY
ILQICANLDAENISTVNRNGEELKKHVYSAIKETRKAAVRTKNPFADIIRQIMVQVEDMA
KSIYNIDGLSNIKNQNRGSQKYEQWIIEVQKRCKVLQMADMEKERKTCRALFTYTEHLRK
YNDAVIINDDARTKDAVKYLGSFFNNVKGGGYDETEQILTALFEAKEEQILRIEADPTNE
NPKLTEVRKILTEEYQKNPMTKTIMFVKTRALADALKNWLKESEMLSFLQPALLLGRAKS
TGMTLPSQKEVLTSFREDSGNKILVATSVADEGIDIAKCNLVLLYEYVGNVIKMIQTRGR
GRAENSKCILITSKEDQIDKEMVNSAQEAMMYRAIKDLQQLGQATFITKKNTIQAEDKMM
EIKNNENTDKAAESYKLLCAKCKMYACLSDDIRKIEHAHHVVIDKTFSTRYQTRPHRNPV
QIGSMQKREKLHCKDCSHDWGITANFNPFKDLPVIKCDSFVFHHVRSGSPQIVKKWKDVP
FSIKTFNNAEFRQEIV
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcagttgacagagaaaatttgaagcaatgggaaagctatatcatcggcattctg
cggccgagttacatccacgcgtttctcgtagattttctaccgcaggttaaggttgaagag
attttatccctggaagaaaagtcttgcacaacttctgcagaacgcttttttgaatccttg
attaaattggaagaagcaggatggtatcgagcatttttagatcaacttagagctgtgggt
tacactggtctgctcaatgccatggagacttttgatttttctgaaattgaaaagctgcgg
gaatataaagaccttttgaatcgcatttctccaacgattgtttctaacataaaaccgaat
gaagtacttaattccatgaaatgcctgctacccagagaaaatgaagagattcgcaaggtc
tctgaatccaagggcgatacagcaggagcagagaagttactcgattgtttgcaaagatca
gatcaatcacaattcttcaaggagtttcagatagctatggacacatacaactatgatgca
gtgacaaatcttttatcttcagatgcagatggtttatctgattgctctgcaaccacagag
tctgtcatgcaatattcagaggagccagaagacatggatactagcagtgcaccaatcatc
catacaccaaacagccaacaaatttcaaatgactttaaacgtatggaattgagagcatat
caagaggagctttcagaaagtgcaattgatggagacaacactattatttgtgcccctaca
gggtctggaaagactatagttgccctccacattgttgagcgtcacctcatggacagtgct
gaccagaataaaaggaaagttggattcatggccacaacggttcctgtctttcagcagcag
ttggaattgtttaagaaccacttcgagatgaccaagttcaaagtgtatggaatatgtggc
gacgtggcaggcaactgtcctgtggagatgttcgtcgagatgaacgatatcataatcctg
acaccgcagattctgctgaatttcctccaagttggctatatttcttcactttccatcttc
accctgctaatatttgacgaatgccacaatacaacaaaaaatcatccttacaacgtttta
atgaggaaatatcgggatctcaaattgggcctggttgcaagtgcatttccacagattgtc
gggctgacggcatcaattggagttggcgatgctggctctgtcaaagatgcaatgagttat
attttgcaaatttgtgccaatcttgatgctgaaaacatatcaactgtaaacaggaatggg
gaagaactaaagaaacatgtttattctgcaattaaagaaacgaggaaggctgccgtgcgt
acaaagaatccgtttgcagacattatccgtcagataatggttcaagttgaggacatggcc
aagagtatttacaacatcgatggtctgtcgaacatcaagaatcaaaatcgtgggtctcag
aagtacgagcagtggatcattgaagtgcagaaaaggtgcaaagttctccaaatggcggat
atggagaaggagcggaagacttgtcgggctcttttcacatacactgagcacttgcggaaa
tacaatgatgctgtcattatcaacgatgatgcacgtaccaaagatgcagtaaaatacctg
gggtctttcttcaataatgtgaagggaggtggatatgatgagacagaacagatacttaca
gcgttatttgaagcaaaggaagagcaaatactaagaattgaagctgacccaactaatgaa
aatcccaagttgactgaagtcaggaagattctgactgaggaataccagaaaaatccaatg
accaagaccatcatgtttgtcaaaaccagagctcttgctgatgcattgaaaaattggttg
aaagaatcggagatgctgtcattcttacaacctgcattgttgttgggtcgagcaaagagc
acaggaatgactttaccctcacaaaaagaagtgttgacttcctttagagaggattctgga
aacaaaatccttgtggcgacatctgttgctgatgagggaattgacattgcaaagtgtaac
cttgtactgttatatgaatatgtgggaaatgttataaaaatgatccaaacaagaggccgt
ggaagagcagaaaacagcaagtgcatccttattaccagcaaggaagatcagatagacaaa
gaaatggtcaattctgcacaggaagcaatgatgtacagagctataaaggacttgcaacaa
ttgggtcaggcaacatttatcacaaagaaaaacacgattcaagcagaagataaaatgatg
gaaataaagaataatgaaaatactgataaggcagctgaaagctataagctcctttgcgca
aagtgcaagatgtatgcatgcttgtctgatgacataagaaaaattgagcacgcacatcac
gtagttattgacaaaacattctcgaccagatatcaaactcgacctcacagaaatccagtg
cagattggttctatgcagaagagagaaaaattgcactgtaaggattgtagccatgattgg
ggaatcactgcaaatttcaacccgtttaaagatctaccagtaattaaatgcgacagcttt
gttttccatcatgtccgtagtggcagcccacagattgtgaagaaatggaaggacgtccca
ttttcaatcaagacatttaataatgctgaatttcgtcaagaaattgtatag
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