Leucoraja erinaceus (little skate): 129698325
Help
Entry
129698325 CDS
T09122
Symbol
lig4
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
129698325 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
leri03400
]
129698325 (lig4)
Enzymes [BR:
leri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129698325 (lig4)
DNA repair and recombination proteins [BR:
leri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
129698325 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_A_C
DNA_ligase_IV
BRCT_2
RNA_ligase
mRNA_cap_enzyme
C8-3_MUC4
Sigma70_r1_1
Motif
Other DBs
NCBI-GeneID:
129698325
NCBI-ProteinID:
XP_055493381
LinkDB
All DBs
Position
6:complement(80162976..80170011)
Genome browser
AA seq
912 aa
AA seq
DB search
MSAASVSNNSLVKTVASEVPFCDFCLTLEKIQKSKSRPEKSKYFKDFLDSWRYFHNALHK
NEVNTTDSFYPAMRLVLPQLERERMSYGIKETMLAKLYIEVLGLSKEGKDALKLLNYRTP
TASYGDAGDFAVIAYFVLKQRCPNKGTLTIQEVNDHLDSIALNNAVKKKDLVKKSLLQLI
CQSSALEQKWLIRMILKDMKLGISQQTIFQLFHADATELHNVTTDLEKICRQLHDPSVSL
SDVSITLFSGFKPMLAAVANMKNIEKLMHNQGFYLETKLDGERMQLHKDGDVYKYFSRNS
YDYSQQFGASSLQGSLTPFIHKAFSSTVQNCILDGEMMAYNPNTKIFMQKGNQFDIKRMV
EDSELQTCFCVFDVLMVNDQKLANETLRKRHEVLLTVFTTAPGRLQIVEKMEINTKKDVA
DALNDAIDKREEGIMVKDPLSVYKPDKRGEGWLKIKPEYVDGLMDELDILIVGGYFGKGQ
RGGMVSHFLCAVAEVPAPGEKPSVFHTICRVGCGYTMKELYDLGLKLDKHWKPYRKSNSP
PNILCATEKPEVYIEPYNSVVLQVKAAEIVRSDGYKTGCTLRFPRIEKIRDDKQWYDCMT
LHDLDELHNKASGKLASKHVDLNDDEPDKKKRKALAKSKKLIGIAEQFKAQDLSNVSKVS
NIFEDVEFCVLNGLDHYAKAELEKGIAECGGLVVQNPGPDTYCVVVGTANIRVRNLVTSN
EHDIVKADWLIDCLQKRHFIPWQPQYMIHMSPSTKEYFAQEYDCYGDSYFADLDKIQLQE
IFQRMVKPEQKLTLKTIADLEQRYGWDQSPVNMFRNCVIYVDLYRTVGDCSTKTHNTSLD
LRVLELRFRGAKCVTCLQEGVSHVIVGNDTQRLRELKLCRREFKKKFKIVVESWVSDSVK
AGYMQDEKVYLL
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagcatctgtgtcaaataattcgctcgtcaagactgtggcctctgaagttccc
ttctgtgatttctgtttaactttggagaaaatacagaaaagcaaatccaggcctgagaaa
agcaagtatttcaaagacttcctggattcatggagatattttcataatgctcttcataaa
aacgaggtgaacaccactgattctttttacccagcaatgcgtctggtattgcctcagctg
gagagggagagaatgtcgtatggaatcaaagaaactatgcttgcaaaactttacattgaa
gttctcggtttgtcaaaagagggaaaagatgcacttaaactcttaaattatagaactcca
acggcctcgtatggagatgcaggtgattttgctgtgattgcctattttgttctgaaacag
aggtgcccaaacaaaggcactctgactattcaggaggtaaatgaccatttggattctatt
gcacttaacaatgctgttaagaaaaaagacttggtcaaaaagagtctgctgcagttaata
tgccagagttctgctctggagcaaaagtggcttattcgaatgatcttgaaggacatgaaa
ttaggtatcagtcagcaaactatatttcagttattccatgcagatgcaacagagcttcac
aacgtgaccacggatttagaaaaaatatgtagacaacttcacgatccctcagtatccctt
agcgatgtttccatcacgctgttttctggttttaagccaatgctcgccgctgttgctaac
atgaaaaacattgaaaagttgatgcacaatcaaggtttttacttggaaactaaactggat
ggggagcgtatgcaacttcacaaagatggagatgtttataaatatttttcgcgcaacagc
tatgattacagccaacagtttggtgcctcctcattgcaagggtctctcacgccatttatc
cacaaggcgttcagcagcacggtgcaaaattgtattcttgatggagaaatgatggcttac
aaccccaataccaaaatcttcatgcaaaaaggaaaccagtttgacatcaaacggatggtg
gaggattcggaattacaaacctgtttctgtgttttcgatgtgctcatggtaaatgatcag
aagctggcaaatgaaactctgagaaaaagacacgaagtccttctcactgtattcacaaca
gcgccaggtcgcttacagattgtggaaaaaatggaaataaacacaaaaaaagacgttgcg
gatgccttgaatgatgctatagataaacgggaggaaggaattatggtaaaggatccttta
tctgtttataagccagacaaacgtggtgaaggttggttaaagattaaaccagaatatgtt
gatggtttgatggatgagcttgacatcttaatcgttggtggctactttggaaaaggccag
cgtggtggaatggtgtctcattttctgtgtgccgttgcagaggttcctgctcctggtgag
aaaccatccgtcttccacaccatttgccgtgtaggttgtggatacacgatgaaggagctt
tacgatcttggtctgaaactagataagcactggaaaccttaccgtaaaagcaattcccca
ccaaatattctgtgtgctactgaaaaaccagaagtgtacattgagccctacaattcggtt
gtccttcaagttaaggcagctgaaattgtaaggagtgatgggtataaaacaggttgcacc
ttgcgttttccacgaattgagaagatcagagatgataagcagtggtatgactgtatgacc
ttgcatgatttggatgaactgcacaataaagcatctgggaaacttgcgtccaagcacgtt
gacctcaatgacgatgagccagataagaagaagcgtaaagctctggcaaaatccaaaaag
ttgattggtattgcagaacagtttaaggctcaagatctatcgaatgtcagcaaagtatct
aatatttttgaggatgttgaattttgtgtcttaaatggccttgaccactatgccaaagct
gagctggaaaaggggattgctgagtgtggaggactggttgttcagaatcctggaccagac
acttactgtgttgttgttggcactgccaatatccgcgtcagaaaccttgtcacttctaat
gagcatgatattgtgaaagctgactggttgatcgattgtttgcaaaagagacattttata
ccttggcaaccccagtacatgattcacatgtcgccttcaacaaaagaatactttgctcag
gagtatgattgctatggagacagctattttgctgatcttgataaaattcagttgcaagaa
attttccaaagaatggtgaaaccagagcagaaattaacattgaaaactattgctgacttg
gagcagcgatacggatgggaccaatcgcctgtaaatatgttcagaaactgtgttatatat
gtagacctatacagaacagttggcgactgcagtacaaagacccacaacacaagcttagat
ttgagggttttggagctgcgatttcgtggagcaaaatgcgtcacatgtctgcaggaaggt
gtctcgcatgtaatcgttggtaacgatacacaacgtctccgggaactgaaattgtgtagg
agagaatttaaaaagaaattcaaaattgttgtggaatcgtgggtgtctgattcagtgaaa
gcaggatatatgcaagacgagaaagtttacttactttag
DBGET
integrated database retrieval system
