Leucoraja erinaceus (little skate): 129701573
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Entry
129701573 CDS
T09122
Symbol
pdgfrb
Name
(RefSeq) platelet-derived growth factor receptor beta
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri04010
MAPK signaling pathway
leri04020
Calcium signaling pathway
leri04510
Focal adhesion
leri04518
Integrin signaling
leri04540
Gap junction
leri04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
129701573 (pdgfrb)
04020 Calcium signaling pathway
129701573 (pdgfrb)
09133 Signaling molecules and interaction
04518 Integrin signaling
129701573 (pdgfrb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129701573 (pdgfrb)
04540 Gap junction
129701573 (pdgfrb)
09142 Cell motility
04810 Regulation of actin cytoskeleton
129701573 (pdgfrb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
leri01001
]
129701573 (pdgfrb)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
leri04090
]
129701573 (pdgfrb)
Enzymes [BR:
leri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
129701573 (pdgfrb)
Protein kinases [BR:
leri01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
129701573 (pdgfrb)
CD molecules [BR:
leri04090
]
Proteins
129701573 (pdgfrb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_PDGFR_d4
Ig_3
I-set
ig
Ig_2
VEGFR-1-like_Ig-like
C2-set_2
V-set
Motif
Other DBs
NCBI-GeneID:
129701573
NCBI-ProteinID:
XP_055498813
LinkDB
All DBs
Position
11:23642386..23688521
Genome browser
AA seq
1062 aa
AA seq
DB search
MKMSAVRWDLLLAGLVVACSLAAHRGGSVEFQELILEPSSNATVNCSASGPVDWLYDGVE
NVQTDGRFLHIYNAASLHTREYVCSANKIPVLSVYIFVPDPEEWFRPQTQQEMVIMGENS
AHITVPCLVTNPDIHVSLYHGETESLVDTPYDNKRGFTGKFKDGTYWCKASLHGEEQESE
EYFVQMFSAPENLVVRLRAPRTVVKRGEAISITCSANVELLEFNWTFPRSEGATIWVSDG
GEEVNSTLELEKALLKDTGWYNCSVLGYFPQHSEDKSLHITVLAKGFVELSTDLSPVVAD
LSEVKMLMANISAYPAPNVRWLKNNVAFNERTNQVTFSNKTLGENRYQCVLNLIRVKAED
FGNYSIEVWNEDAKADFTFTLSVNVPARIVDLKDYLEATGHQTVTCVTEGSPMPEISWYT
CQNLKRCNSNEEMWSPLRVNASGIWVKRRVLEVQPNQIYRVQSVVTQESGGDINAMRCST
SNGIGKANREIKLVNNGLHSQLVTVATILVFLVIIIISLVLVMVVWRKKPRYEIRWKVIE
SISSDGHEYIYVDPTQLPYDSNWEFPRNQLSLGRTLGSGAFGRVVEATAHSLGHSDSITK
VAVKMLKTTARTSEKQALMSELKIMTHLGPHLNIVNLLGACTKEGPIYLITEYCRHGDLV
DYLYRNKQSFVQMCSRVERGETDGGLVTNYHQRLKSYVALSFDGDGGYMDMNKEERVDYT
PMLQPPAPGGYAQIAHDHYTDPYIEQPNTRTDEDDSPEQLLISESPALSFMDLVGISYQV
AHGMEFLALRNCVHRDLAARNVLICEGKLAKICDFGLARDIVNDSNYISRGSTFLPLKWM
APESIFNNLYTSLSDVWSYAVLLWEIFTLGGTPYPELPINDQFYNAIRRGYRMPKPHYAT
DEIYAIMKKCWNDEFEKRPSFSSLVTSIGNLLTDSYKKKYAQVSKEFMKNDHPALRRTRP
NTYQDNEDIIYSNCQYPQGQDNGYIIPLPDPDPSEATVDLPTPAELPTVEPSDGTRPSSL
ACGENEEPANTGDLPQMTVDATKVEMESEAEWNQPEVEDSFL
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgtctgccgttcgctgggatctcctccttgctggactcgtggttgcgtgttca
cttgctgcccatcgcggaggtagcgtggagtttcaggagctgattctagaaccttcctcc
aacgccactgtgaactgctcggccagcggccccgtcgactggctgtacgatggggtggag
aatgtccagaccgatggtcggttcctgcacatctacaacgccgccagcttacacaccaga
gagtacgtctgctccgccaacaagatccccgtgctcagcgtctacatcttcgtgccagat
cccgaggagtggttccgtccccagacccagcaggagatggtgatcatgggcgagaactct
gcacacatcacggtgccctgcttggtgaccaaccccgacatccacgtctcactctaccat
ggagagacagagagcctggtggacaccccctacgacaacaagcgaggcttcaccggcaag
ttcaaggacggcacgtactggtgcaaggccagccttcacggagaggagcaggagtctgag
gaatacttcgtgcaaatgttttcagctcctgagaacctcgtggtgcggctccgggcgccg
aggacggtggtgaagaggggggaggccattagcatcacctgttctgccaacgttgagctg
ctggaattcaactggactttccccaggagtgagggagctactatttgggtgtcggatggt
ggtgaggaggtgaactcgaccctggagctggagaaggccctgctgaaagacacgggctgg
tacaactgcagtgtcctcggatactttccccagcattctgaggacaaatctctacacatc
accgtcctggccaaaggttttgtggagctgagcaccgacctgtcaccagtggtcgcagac
ctgtcggaggtgaagatgttgatggctaacatctcggcctacccggcccccaacgtgcgg
tggctgaagaacaacgtggccttcaacgagaggaccaaccaagtgacattcagcaataag
accctgggggagaacaggtaccagtgcgtactcaatctgatccgggtgaaggcggaggac
tttgggaactatagtattgaggtgtggaatgaagatgcaaaggcagatttcaccttcact
ctaagtgttaacgtgccagcgaggatcgtggatctcaaagactatctggaagccactggt
caccagactgtaacctgtgttactgagggctctccaatgccagagatcagctggtacacc
tgccagaacctcaagaggtgcaacagcaacgaggagatgtggtcgccgctgagagtcaac
gccagtgggatctgggtgaagaggagggtccttgaagtccaacccaaccagatctaccgg
gtgcagagtgttgtgacccaggagagcggaggggacatcaatgccatgcgctgctccacc
agtaatggcatcggcaaggctaaccgcgagatcaaactggtcaacaacggcctacactcc
cagctggtcaccgtggcaaccatcctggtgtttctggttatcattatcatctcgttggtg
ttggtgatggtcgtgtggagaaagaaacctcgctatgagatccgctggaaggtgattgaa
tctatcagctccgatggccatgaatacatctacgttgaccccacacagttgccgtacgat
tcaaactgggagtttcctcgaaaccagctctccttgggaaggacgctgggctcaggggcc
tttggccgggtggtagaagccaccgcacacagcctggggcactccgactccatcaccaag
gttgctgtcaagatgctcaagaccactgcccggaccagcgagaaacaggcactgatgtct
gagctgaagataatgacccatctcgggccccatctcaacatcgttaacctgctgggagcc
tgcactaaggaaggtcccatctacctgatcacggagtactgtcgccatggcgacttggtg
gactacttgtaccgtaacaagcagagcttcgtacagatgtgcagccgagtggagagaggg
gagactgatggaggtcttgtcaccaactaccaccaacgcctcaagagttacgtggccctg
tcttttgacggtgatgggggatacatggacatgaataaggaggagcgggtggactacacg
cccatgttacagccgcccgcaccaggcgggtacgcacagatcgcccacgaccactacacc
gacccctacatagagcagcccaacacacgtacagatgaggatgattctccagagcaactg
ctcatcagtgagtcgcctgcgctcagcttcatggacctggtggggatcagctaccaggtg
gcacacggcatggagttcctcgccctacgaaactgtgtccaccgagatctagcggcaaga
aacgttctgatctgtgaggggaaactggcgaaaatctgcgactttgggctggcccgcgat
atagtcaacgattccaactacatttccagaggaagtaccttcctgccgctgaagtggatg
gccccggagagcatcttcaacaacctgtacaccagcctgagtgacgtgtggtcctacgct
gtgctgctctgggagatcttcactctgggtgggaccccgtacccagagttgcccattaac
gaccagttctacaacgccatccgacggggctaccggatgcccaagccgcactatgccacc
gatgaaatatacgccatcatgaaaaagtgctggaacgacgaatttgagaagagaccttcc
ttctccagcctggtcacatccatcgggaaccttctcactgacagctacaagaagaaatac
gctcaggtcagtaaggagttcatgaagaatgaccatccagctctacgccggaccagaccc
aacacctaccaggacaacgaagatatcatctactccaactgccagtaccctcaggggcag
gacaatgggtacatcatccccctgcccgaccctgaccccagcgaggccactgtggacctc
cccaccccagcagagctgcccacagtagaaccgtctgacgggacaaggcccagctccctg
gcctgtggtgagaatgaagaaccggccaacactggtgatcttcctcagatgacggtagat
gccaccaaggtggagatggagagcgaagctgagtggaaccaaccggaagtggaggacagt
ttcttgtga
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