Leucoraja erinaceus (little skate): 129702022
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Entry
129702022 CDS
T09122
Name
(RefSeq) short transient receptor potential channel 5-like
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
leri01009
]
129702022
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
leri04040
]
129702022
Protein phosphatases and associated proteins [BR:
leri01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
129702022
Ion channels [BR:
leri04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
129702022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_4
Ank_3
Ank_5
PKD_channel
YVC1_C
LHD_TRPY1
DUF5382_C
Motif
Other DBs
NCBI-GeneID:
129702022
NCBI-ProteinID:
XP_055499493
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All DBs
Position
12:complement(5767288..5848868)
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AA seq
986 aa
AA seq
DB search
MAQLYYKKANYSPYIDRIPLQIVRAETELSLEEKAYLNAVEKGDYASVKQGLEEAEIYFN
ININCTDPLGRSALLIAIENENLEIMELLLSFCVYVGDALLYAIRKEVVGAVELLLHHRK
PRGEKQVPPLLMDAQFSEFTPDITPIMLAAHTNNYEIIKLLVHGGVSIPRPHQVRCNCVE
CVSSSEVDSLRHSRSRLNIYRALASPSLIALSSEDPILTAFQLGWELKELSKVENEFKAE
YEELSLQCKLFAKDLLDQARSSHELEIILNHRDDQSEKLDPQKCHDLAKLKVAIKYHQKE
FVAQPNCQQLLATLWYDGFPGWRRRHWAVKLLTCVTIGFLFPVLSAVYLAAPKSRLGLFI
KNPFIKFICHTGSYLTFLFLLLLASQHIVKTDLHMQGPPPTIVEWMILPWVLGFIWAEIK
EMWDGGFNEYVHDWWNLMDFAMNSLYLATISLKIVAYVKYNGSRPREEWEMWHPTLIAEA
LFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYF
YYETSASEEPKHCKGIRCEIQNNAFSTLFETLQSLFWSVFGLLNLYVTNVKARHEFTEFV
GATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGATLPPP
FNIIPSPKSIWYLCKWLHAQICPGSDTKHEQKHENLKEFTERHADDLIQNQHYQEVIKNL
VKRYVAAMIRSAKTDEGLTEENFKELKQDISSFRYEVLDLLGNRKSSRRTYSTSSDGMQI
EEDTADDKIDQIVSFSLGGESNDKKKLKMNSFSVSALIKTVSGIDLEEKSRSSRLSKQPS
TIQNGNRLQGYPNSKGDSFKRLGLLFTKMNGQLAETSPEPVASISDGLLQAHNMWQDFRY
TQVASPANRSRSESSLHAVGPNEANRIDSHCPTNHTDSFPCSSNISASSNKLIDSSSDVY
DSWGEACDLLMTRWNNHQEDYVTTQL
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atggcccagctgtactacaaaaaagccaactattccccgtacatagaccgcatcccgctg
cagattgtccgtgcggagactgagctgtcactggaggagaaggcttacctcaacgccgtg
gagaagggcgactatgccagtgtgaagcagggtctggaggaagccgagatctacttcaac
atcaacatcaactgcaccgacccgctgggacgtagcgcgctgctcatcgccattgagaat
gaaaacctagagatcatggagctgctcctaagcttctgcgtgtatgtgggagatgccctg
ctctacgcaatacggaaggaggttgttggggcggtcgaactcctgctgcatcataggaag
ccacgtggagagaaacaggttcctcctttactcatggatgcccagttctcagagttcacc
ccggacatcacgcctataatgcttgccgcgcacaccaataattatgagatcatcaagctg
ctggtacacggtggggtctccatcccccgaccgcatcaggtgaggtgcaactgcgtggag
tgcgtctccagctcggaggtggacagcctccgccactcgaggtcgcggctcaacatctac
cgcgcgctggccagcccgtcgctcatcgccttgtcgagcgaggaccccatcctcaccgcc
ttccagctgggctgggagctgaaggagctcagcaaggtggagaacgagttcaaggcagag
tacgaggagttgtcgctgcagtgcaagctcttcgccaaggacctcctggaccaggcacgg
agctctcacgagctggagatcatcttgaaccaccgcgatgaccagagcgaaaagctggac
ccacagaagtgccacgacctcgctaagctcaaggtggcaatcaagtaccaccagaaagag
tttgttgcccagcccaactgccagcagctgttggccacgctgtggtacgacggcttcccg
ggatggcgccggcgacactgggcggtgaagcttctgacctgcgtcaccatcggcttcctc
tttcccgtcctctccgccgtctacctggcggctcccaagagcaggctggggctcttcatc
aagaaccccttcatcaagttcatttgccacacgggctcctacctgaccttcctcttcctg
ctcctcctggcctcccagcacatcgtcaagaccgacctccacatgcaggggccgcccccg
actatcgtcgagtggatgatattgccgtgggtgctgggttttatctgggctgagatcaag
gaaatgtgggacggtggatttaatgagtacgttcatgattggtggaacttgatggacttt
gccatgaactccttgtatttggccaccatctcactgaagatcgttgcctatgtgaagtac
aacggctcccggccgcgggaggagtgggagatgtggcaccccacgctgatcgccgaggct
ctctttgccatcgccaacatcttcagctccctccggctgatctcgctcttcaccgccaac
tcccacctggggccactgcagatctcgctggggcggatgctgctggatatcctcaagttc
ctcttcatctactgcctggtgctgctcgccttcgccaacggtctgaaccagctctacttc
tactacgagaccagcgcgtccgaggagcccaaacactgcaagggaatacggtgcgagatt
caaaacaacgccttctctacgttgttcgagacactgcagtcgctgttttggtcagtcttt
ggcctgttgaatttgtacgtcaccaatgtgaaagctcggcatgagttcaccgagtttgtg
ggagccaccatgtttggaacctacaatgtcatctccctggtcgtcctgctcaacatgctg
attgccatgatgaacaactcctaccaactcatcgccgaccacgctgacattgaatggaaa
tttgcccggaccaagctctggatgagttactttgatgaaggtgccacccttccgccacct
ttcaacatcatccccagcccgaagtccatctggtacctgtgtaaatggctgcacgctcag
atctgcccaggcagcgacacgaagcatgagcagaaacatgaaaacctcaaggaatttaca
gagcgacatgcagacgacttgatccaaaaccaacactaccaggaggttattaaaaattta
gtaaagaggtacgttgcagcgatgatcagaagtgccaagactgacgaaggactgactgaa
gaaaattttaaggaactgaagcaagatatctccagcttccgctatgaagttcttgaccta
cttgggaacagaaagtcatctcggagaacatattcgaccagcagcgatggcatgcaaatt
gaggaagacactgcagatgataagatcgaccaaatagtgtcgttcagcttggggggagaa
agtaacgacaaaaagaagctgaaaatgaactcgttcagcgtctcggcgctcattaagaca
gtctccggcatcgacctggaggagaagtcgcggagtagccggctgagcaagcaaccttct
accatccaaaacggcaaccgcttgcaggggtacccgaactccaagggggattcctttaaa
cggctcggcctgctcttcaccaagatgaacggccagctggcggaaacgtctccagagccc
gtcgccagcatttccgacgggctcctccaagcgcacaacatgtggcaggacttcaggtac
acccaggtggccagccccgccaacaggagcaggagcgagagcagcctccacgcagtcggt
cccaatgaggccaacagaatcgatagccattgcccaacgaaccacacagactcattccct
tgctcttccaatatcagtgcctccagcaataaactcattgactcatcgagtgatgtctat
gattcatggggagaagcctgtgacttgctgatgaccaggtggaacaaccatcaagaggac
tatgtaaccactcagttataa
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