Leucoraja erinaceus (little skate): 129704619
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Entry
129704619 CDS
T09122
Symbol
plxnd1
Name
(RefSeq) plexin-D1
KO
K06822
plexin D
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09190 Not Included in Pathway or Brite
09193 Unclassified: signaling and cellular processes
99995 Signaling proteins
129704619 (plxnd1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Plexin_cytopl
Plexin_RBD
TIG
Sema
PSI
TIG_plexin
PSI_PlexinA-B
TIG_2
PEP5_VPS11_N
GAPT
Motif
Other DBs
NCBI-GeneID:
129704619
NCBI-ProteinID:
XP_055503836
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All DBs
Position
16:complement(23664800..23737615)
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AA seq
1897 aa
AA seq
DB search
MMMLSLGRMLLRAGLMLVLILPPALPMQVCQKFRSDTPTNNLAVQAGPQPGPRVYVGSVN
AVYQLGWKLGLEARVRTGPVQDNALCHAPQLPHSSCEHLRRHTDCYNKLLLPDASQGLLV
VCGSVHQGFCQLRQLANISQLAVPFPPADGSGLVFPSMLYVAANHPQASTVGLVLPGLGG
GGGSRLLVASTYTGLGTRYFPTNSSREDLRFENTPEIAIRALDTRQSSRLFTYDINPSED
NVFKVKAEAKARNRLSFVRAFSYQNYTYLALNNDADSGGKGGRARSLLARICTGARGSRP
SESRKLTESYIQLGLRCFADPTLFGRLLSVWPGPGHRLYGLFQGPEDSEQRSALCVFNFS
DIDHSMRSARRQCFKEKHSQEVTVLDSVIQGSGPACIQRNITLHEEQLDCGAAHLQHPLA
IRDPVKASPILEESGLTSVAVSSLNNHTVVFLGTANGQLLKLNLQNNQILKREVLLVASD
EAVHHIMHFDPEDQNYLYVMTMHQISRVRVASCNQSQSCQECLGAHDAYCGWCTLESRCT
LQQDCANSTQPSFWIDLNSGIAKCPTMNITPSEIDNNLAAVKNIEIIINGHVPQLMGRDV
RCHYVNVEKTSATISENNSGPSQMVHCPFLQKAKYPAFLSDKDHVIVTVAIEVDNRLIVS
GNVTFYDCERTGKVDAKTACRSCLQTRWTCFWCVPNHKCVSQKAECKSSVTGAVPETFAQ
CPQMMPVQVLPVSTGTTRSFPVSIKNSAPLQGRKLQCEVGHQVYEARWLNSSQVLCEDVR
LFTANSSQHFPISLKLKEDPEKLIDNPSTISVVVYNCASGSSDCSECWGRQNRGHQCIWC
GTTQSCKLQSECRQIADVCPAPEIHRIEPLTGPVHGGTHLTIRGRNLGRRFSDIADGVRI
GVVSCIPVQEDYVVSSQIVCITETANGEFTNAVSVRVQEEESSKQRFSFLVPETILVVPD
QGPKAGGTRVTISGKNLHIGSSVRIIVNDAKDCINVRRNQSAIVCVMPAMHVAEGSISIC
VQFENGECTNNTMTYKYRENPLIESISPYTSYISGGRKITVKGQRFNLIQNVVMMVKLIG
WAQSTCEVVNDSVLICPSPAYSVSTVIINFYINGILYQKLSPGFSMKYFNDPQFSRKEKL
IKHHQGEPLTLVIEKIPDNLNLAPEEYKVTIGPFPCDIYVVKRKIHCTMNVSIDSNEQQL
PVTVQVGNYNETIAMVQLGESTTSVVISIVVCLLLLLACGIALVIFCTKSRRAERYWQKT
LIQMEEMEAQIREEIRKGFAELQTDMTDLTKELNRSQGIPFLEYKYFVIRTFFPKCSIDC
ESRSPECFHQLNAQSREATISSNRPETHPLLQLEWKVPENSRHNMEEGIALFSMLLSNKH
FLITFVHSLEQQKDFAVRDRCNIASLLTIALHSKLEYFTSIMKDLLVDLIDASASKNPKL
MLRRTESVVEKMLTNWMSICMYSFLKETVGEPFFLLLCAMKQQINKGSVDAITGKARYTL
NEEWLLRENIEAKATNLNVSFQGCGMDSITVRVMDSDSISQVKEKILEGFYKNVPFSQWP
RVEDVDLEWFASSGDSRILRDLDNTSIVEDGRKKLNMVAHCKVPDGASLAMSLKDQRDGT
LGRVKDLDTDKYFHLMLPNDELGDNSRSHKHSQRKKVLPEIYLTRLLSTKVRSLSRGSWL
QKFLDDLFCSVLHPHLFILMKPRARSLCMKYFFDFLEEQAEKRGTSDPDTLHIWKTNSLP
LRFWVNILKNPQFVFDIEKTDHMDACLSVIAQAFIDACSISDLQLGKDSPTNKLLYAKEI
PEYKKAVQRYYREIQEMITLSEQEMNAHLAEESRKHQHEFNTNFALAEIYKYAKRYRNQV
MNALESNSTTRRLQMQHKFEQVIALMEDNIYECCSEA
NT seq
5694 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgctgagcctggggagaatgctgctccgtgccgggctgatgctggtgctgata
ctgcccccggcactgcccatgcaagtgtgccagaaattccgcagcgacacacccaccaac
aacctggcggtgcaggccgggccgcagccagggccccgggtgtacgtgggctcggtgaac
gctgtttaccagctaggctggaagctggggctggaggcgagggtgaggacgggcccggtg
caggacaacgccctgtgccacgcaccgcagctcccgcacagcagctgtgagcacctgcgc
cggcacaccgactgctacaacaagctgctgctgcccgacgccagccaggggctgctggtg
gtgtgcggctccgtgcaccagggcttctgccagctgcggcaactggccaacatcagccag
ctggccgtgcctttcccgcccgccgacggcagcggcctggtcttccccagcatgttgtac
gtggcggccaaccacccgcaggcctccaccgtgggcctggtgctgcctggcctgggcggc
ggtggcggcagccggctgctggtggcctccacttacacgggcctgggcacccgctacttc
cccaccaacagcagccgtgaggacctgcgcttcgagaacacgcccgagatcgccatccgc
gccctggacacccgccagtcgtcccgtctcttcacctacgacatcaacccgtccgaggac
aacgtcttcaaggtgaaggccgaggccaaagcccgcaaccggctgagcttcgtgagggcc
ttcagttaccagaactacacctacttggcgctcaacaacgacgccgactccggcggcaag
ggaggccgcgcccgcagcctgctggcccgcatctgcaccggagcccggggctcccgccca
tccgagagccgcaagctgaccgagtcctacatccagctgggcttacgttgcttcgccgat
cccaccctcttcggccgcctgctctccgtgtggccaggcccgggacaccggctgtacggc
ctgttccaggggcccgaggacagcgagcagcgctccgccctctgcgtcttcaacttcagc
gacatcgaccacagcatgaggagcgcccgacgccagtgcttcaaggagaagcacagccag
gaggtgaccgtcctggacagcgtgattcaaggaagtggaccagcctgcatccaacgcaac
atcacactgcatgaagaacagctggattgtggggctgcccatctgcagcaccctctagcc
atcagggacccagtgaaggcttccccgatcttggaggagagtggcttgacctcggtggca
gtatcaagtctgaataaccatacagtggtgtttctaggcacagccaatggccaacttcta
aagctgaacttgcagaataaccagattttgaagagagaggttcttctcgtggcatcggat
gaggctgtccatcacatcatgcattttgacccggaggaccagaactatctctacgtgatg
accatgcaccagatcagtcgggtgagggttgcttcctgcaaccagtcccagtcctgccag
gagtgtttaggagcacatgatgcctactgcggatggtgtaccttggagagccgctgtact
ctacagcaggattgtgctaattccactcaaccctcattctggatcgacctcaactctgga
atagcaaaatgtccaaccatgaacattactccgtcagaaatcgacaataaccttgcagcc
gtaaagaacattgaaatcatcatcaatggacatgtcccacagttaatgggcagggatgtt
cgctgtcattatgttaatgtggagaagacttcagctaccatctctgaaaataattcaggc
ccgtcacagatggtgcactgtcctttcctacagaaggccaagtacccagcgttcttgtcc
gataaagatcatgttattgtaacagtggcaatcgaggtggacaatcgattgatcgtgtct
ggaaatgtaaccttctatgattgtgagagaacaggaaaggttgatgcaaagacagcatgc
agaagttgcttacaaactcgttggacctgcttctggtgtgtacccaatcacaagtgtgtc
tcacagaaagcagagtgcaagagcagtgtaactggtgcagtacctgagactttcgcacag
tgcccccaaatgatgccggttcaagtcctgccagtttccactgggaccacccgaagcttc
ccagtctccataaagaacagtgcaccgctccagggcagaaaactgcagtgtgaggttgga
caccaggtatacgaggcgcggtggctcaacagttcccaggtgttgtgtgaggatgtcagg
ttgtttacagccaactcaagccagcactttcccatcagtctgaagctgaaggaagaccca
gagaagctgattgacaatcccagcaccatctcagtggtggtgtacaactgtgcgagtggg
agctcagactgctcagagtgctgggggcgacagaaccgtggccatcagtgcatctggtgt
gggaccacccagagctgtaagttacaaagtgagtgcaggcagatcgctgacgtttgtcct
gctcctgagattcacaggatagaaccactgactggtcctgtgcatggtggcacgcacctc
actattagaggccggaacctgggccgcaggttcagtgacatcgctgatggtgttcgcatt
ggtgtcgtttcatgtatccctgtacaggaagattatgttgtctcatcacagattgtgtgc
ataactgaaacggccaacggagagttcaccaacgcagtaagcgttagggtccaggaggaa
gaaagctccaagcaaagattctctttcttggttcctgagactatcttggtagtgccagat
caaggacccaaagctggaggcaccagagtcaccatcagcggcaaaaatctacacattggt
tcttcagtcaggatcattgtcaatgatgccaaggactgtatcaatgtaagacggaaccag
agtgccattgtctgtgtaatgccggccatgcatgtagctgagggaagcatttccatctgt
gtccagtttgagaatggagaatgcaccaacaataccatgacctacaagtatcgagagaac
ccattgatagaaagtatcagcccatacaccagctacatcagtggtggacggaagatcaca
gtaaaaggccagcgtttcaatttgatacagaatgtcgtcatgatggttaaactaattgga
tgggctcagtcgacatgtgaagtcgtgaatgattctgttctcatctgtccatctccagcc
tattcggtttccacagtgatcattaatttctatatcaatgggattctctatcagaaactt
agcccagggttctccatgaaatatttcaacgatccacagttctcccgcaaggagaagttg
attaagcaccatcagggagagcctctcactctggtgattgagaagataccagacaacttg
aacttggctcctgaggaatacaaagtgacgattggcccttttccttgtgacatctacgtt
gttaagagaaagattcactgcaccatgaatgtgtcgatcgattctaatgaacagcagttg
cctgtcacggtgcaagtgggaaattacaatgagacgattgcgatggtacaactgggagag
agtacgacttcagtcgtgatatcgatcgtggtctgcctgttgttgctgctggcttgtggc
attgccttggtcatcttctgtacaaagagccgtcgagctgagcgatattggcagaagact
ctgattcagatggaagagatggaggctcaaatcagggaggagattcggaaaggttttgct
gagttgcagactgatatgactgacctcaccaaggagctaaaccggagccagggtattccc
ttcctcgagtacaagtacttcgtcattcgcacctttttcccaaaatgttcaattgattgt
gaaagcagaagccccgagtgtttccatcagctgaatgcccagtccagagaggctaccatc
tccagcaaccgaccagagacccacccactgctgcagcttgagtggaaggtccctgaaaac
tctcggcacaacatggaggagggcattgccttgttctccatgctgctgagcaacaaacac
ttcctcatcacgtttgtacattctctggaacagcagaaggactttgctgtgcgagacagg
tgtaacatagcttccttgctgaccattgcactgcacagtaaactggagtacttcacaagt
atcatgaaggacctgctggtggatctaattgacgcctcagcttccaagaacccgaagctg
atgttgcggaggacagagtcggtggtggagaagatgctgaccaactggatgtccatctgc
atgtacagcttcctcaaggaaaccgtgggggagccatttttcttgctgttgtgtgcaatg
aagcagcaaattaacaaaggttcagtggatgccatcaccggcaaggctcgttacaccctc
aacgaagagtggctgctgagggagaacattgaggccaaagcaacgaatctcaacgtgtca
ttccaaggatgtggtatggactccatcactgtccgggtgatggacagtgactccatcagt
caagtaaaggagaagattctggaaggtttttacaagaatgttccattttcccaatggccg
agggtggaagatgtggacctggagtggtttgcatcgagtggtgacagccgaattctgcga
gacttggacaacacttccattgtcgaggatggtcgtaaaaagctcaacatggtggcacat
tgcaaggttccggatggagcctcattggcgatgagcttgaaggaccagagagacggcaca
ttgggacgagtgaaggacttggacactgataaatacttccatttgatgcttccaaatgat
gagctgggtgataacagccgctcacacaagcacagccaacggaagaaggttttgccagag
atttacctgactcgacttctctccaccaaggtgaggagtttatcacggggttcttggctg
cagaagttcctggatgatttgttttgctctgtgctccacccacatttatttatcctcatg
aaacccagggcacgctccctttgcatgaaatatttctttgatttcctggaggagcaagct
gagaaacggggcacttctgacccagacacccttcacatctggaaaacaaacagcttacct
ctacgcttctgggtgaatatcctaaagaatcctcagtttgtgtttgacatcgagaagacg
gaccatatggatgcctgtctgtcagtgatagcccaggccttcatcgacgcctgttccatc
tcggacctgcagctgggaaaggattcaccaacaaataaactcctgtatgccaaagaaatc
cctgaatacaagaaggccgtgcagagatattacagagaaatccaggaaatgattacactg
agtgaacaagaaatgaatgctcacctggcagaggaatcccggaaacaccaacatgagttt
aataccaattttgcattggctgaaatctataagtacgctaaacgatatcgcaatcaggtg
atgaatgccttggaatcaaactcaacgaccagacgcctgcaaatgcaacacaagttcgag
caagtcatcgcactgatggaggacaacatttatgagtgttgtagcgaagcatag
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integrated database retrieval system
