Leucoraja erinaceus (little skate): 129708426
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Entry
129708426 CDS
T09122
Symbol
rfng
Name
(RefSeq) beta-1,3-N-acetylglucosaminyltransferase radical fringe isoform X1
KO
K05948
fringe [EC:
2.4.1.222
]
Organism
leri
Leucoraja erinaceus (little skate)
Pathway
leri00514
Other types of O-glycan biosynthesis
leri04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
129708426 (rfng)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
129708426 (rfng)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
leri01003
]
129708426 (rfng)
Enzymes [BR:
leri01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.222 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
129708426 (rfng)
Glycosyltransferases [BR:
leri01003
]
Glycan extension
O-Glycan
129708426 (rfng)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fringe
Galactosyl_T
Motif
Other DBs
NCBI-GeneID:
129708426
NCBI-ProteinID:
XP_055510143
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All DBs
Position
23:complement(27515282..27547793)
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AA seq
403 aa
AA seq
DB search
MRFHGSANVRLCFLLALSLCTSLLLLVGLQQWARQDLLASIPWRSGNATRLRSSLHGQGL
AATSAGSSSTRPSPIPTRGPPWHQVAEALRGSQNSLEEKEPPWRERAGVTPEEEAALLLW
DTPLHRPGSGKHNVKLSDIFIAVKTTRKYHKARLDLLFQTWISLVQNQTFIFTDGEDKEL
RAKAGGNMINTNCSAAYTRQALCCKMSVEYDKFIESKKKWFCHFDDDNYVNIRSLVHLLS
TYSHTQDVYIGRPSLDHPVEALERVRSGGSTSVKFWFATGGAGFCISRGLALKMSPWASF
GNFISTAEKIRLPDDCTIGYIIEGLLEVKMIHSDLFHSHLENLQQLPAPTILKQVTLSYG
NSDMKRNVLRVQGPFSQVEDPSRFKSIHCLLYHDVWCPPEDGE
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttccacggctctgccaacgtccggctctgcttcctgctcgccctcagtctctgc
acctcgctgctgctgttggtggggctccagcaatgggcacgccaggacctgctagcctcc
atcccctggaggtccggcaatgccacccggctcaggagctccttgcacgggcagggactg
gctgcgacctccgccgggagctccagcactcgtcccagccctatcccaacaaggggaccc
ccctggcaccaagtggccgaggcactcagaggttcccagaacagcctcgaggagaaggag
cctccatggagagagagggctggggttacaccagaggaggaggcagctctgctgctatgg
gacaccccccttcaccgccccggctccggaaaacacaacgtgaaactcagtgacatcttt
attgcggtgaaaaccacacggaagtatcacaaggccagattggatctgctctttcagacc
tggatatctctggtccagaaccagacatttatattcacggatggcgaggataaagaattg
cgggcaaaggctggaggcaacatgatcaatactaactgctctgctgcatatacacgccaa
gcactttgctgtaagatgtctgtggagtatgacaaattcattgaatctaaaaaaaaatgg
ttttgccactttgatgatgataattatgtaaatattcgaagtctggtccacctgttgtcc
acatattcgcacacccaagatgtttatattggcagaccaagccttgatcaccctgttgaa
gctttggagagggtaaggagtggtgggtcgacctctgtgaagttttggtttgctacgggc
ggtgctggcttctgcatcagccgtgggctggcattgaaaatgagtccctgggccagtttt
gggaactttatcagcacggcggagaagatccgtctgccagacgactgtacgatcggctac
atcatcgagggcctgctggaggtgaagatgatccacagtgacctgttccactcccacctg
gaaaacctgcagcagctccctgctcccaccatcctcaaacaggttaccttgagttacggg
aattcagacatgaagcggaacgtgctgagagtccagggccccttcagccaggtcgaggac
ccttcaaggttcaaatctatacactgtctcctgtatcacgatgtctggtgtcccccagaa
gatggagagtga
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