Leucoraja erinaceus (little skate): 129710391
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Entry
129710391 CDS
T09122
Name
(RefSeq) sodium channel protein type 2 subunit alpha-like
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
leri
Leucoraja erinaceus (little skate)
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
leri04040
]
129710391
Ion channels [BR:
leri04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
129710391
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
IQ
GP3_package
Motif
Other DBs
NCBI-GeneID:
129710391
NCBI-ProteinID:
XP_055513333
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All DBs
Position
27:complement(30080005..30321320)
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AA seq
1883 aa
AA seq
DB search
MACFLKHPGPDSLRRFTRESLDEIEKRIAKEKAETATKPVVEEEVREIKPKGDLEAGKTL
PFIYGDIPPELVGDPLEELDPFYASKRTFIILTKGKTIFRFSTTPAMYLLSPFNLLRRIA
IKVLIHSLFSLFIMFTILANCIFMTMSDPEPWTKNVEYAFTGIYTFESMIKIFARGFVID
SFTFLRDPWNWLDFSVITMAYLTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVGALI
QSVKKLADVMILTVFCLSVFALIGLQLFMGNLKNKCVIWPPSDELFYNSTFIQNGSGMDN
DTLIGNHNGSFNQHAYINNEENQYFLEDSLDALLCGNASDAGKCPDGYMCMKAGRNPNYG
YTSYDTFGWAFLSLFRLMTQDFWENLFQLTLRAAGKTYMIFFVIIIFIGSFYLINLILAV
VAMAYAEQNEATLREAEEKEKEFQEIMESIKKHQEEQEAQLQAAKDQVGSQYSLASDGVR
KKDDAVNGGIEDGHGLGDGGESQRDSLTVPYTKSTVSITVNGVVSQDGENGTTPNGRVKP
HTDTHKVDYSVSVRDSDDEISGSKRTSMFLEEPASSKKTGSMASVHSTVTLNELEEAHQK
CPPWWYRFANRFLIWDCCPLWVKVKGILKIIVMDPFVDLGITICIVLNTLFMAMEHYPMS
ESFENMLSVGNLVFTGIFTAEMVFKLLALDPYYYFQVGWNIFDSIIVTLSLVELGLANVQ
GLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFG
KMYKQCVCKISEDCLLPRWHMFDFFHSFLIVFRILCGEWIETMWSCMEVAGRPMCLIVFM
MVMVIGNLVVLNLFLALLLSSFSADNLSASDDDNEMNNLQIAMNRITRGIDFVKGFFFGI
LRRKKNVQENKQLEDFSPSKDGILDFNHTDSESKKDEMSKLDGVKLKKGEHQDGIVANTH
LTVRVPIAEGESDTEYDEQSSDADTEDASMVLEQLKVNIGSSQCSTVDLNVEEKEEDIKE
EVPEADEPVECLTEGCLRTCPCLELDVTSERGKMWWNLRKTCFKIVEHNWFESFIIFMIL
LSSGALAFEDIYIEDRKTIKILLEYLDQVFTYVFVVEMLLKWTAYGFKTYFTNAWCWLDF
MIVDVSLISLAAKILGYDQLGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMN
VLLVCLIFWLIFSIMGVNMFAGKYFKCINTTDSTMFPIDVINNKTDCELYISMYPDEVRW
VNLKVNFDNVGQGYLSLLQVATFKGWMEIMYAAVDSREVTQQPSYEINLYMYMYFVIFII
FGAFFTLNLFIGVIIDNFNQQKKKFGGKDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPNN
KCQGAFYDLVSNQAFDIFIMILICLNMVTMMVETDEQSKEAEEILYWVNLVFIVVFTCEC
FLKIIGLRYYFFTIGWNIFDFVVVILSVVGIMLADIIEKYFVSPTLFRVIRLARIGRVLR
LIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMSNFAYVKKEAGIDDMFNFE
TFGNSMICLFMITTSAGWDGLLLPIMNSSPPDCDPNAYNPGTTVTGNCGNPLMGVVFFVS
YIIVSFLIVVNMYIAIILENFNVATEESAEPLCEDDFEMFYEVWEKFDPEATQFVEYARL
SDFADTLKEPLRIAKPNKIKLITMDLPMVIDDKIHCLDILFALTKEVLGESGEMDALKES
MEEKFMAANPSKVSYEPITTTLRRKQEEVCAIKIQRAFRRHMLKRTVKHASYMYRQSLVD
SILPDEEPPEKEGLVAVRLSQNYGKGQPDQECPPTLAQETPTTPQGVTDIPLESAVTALE
GEVPTDEPTDWFPESKDIRESVV
NT seq
5652 nt
NT seq
+upstream
nt +downstream
nt
atggcgtgtttcctcaagcatccgggacctgacagtttacgccgattcacccgagagtct
ttggatgaaatcgagaaaagaattgcgaaggaaaaagctgaaacggcaacaaaacctgtt
gtagaagaggaagtcagggaaatcaaacccaaaggagaccttgaggctggcaagaccctg
ccatttatctatggagatattcctccagagttagtcggagatcctctggaagaactagat
cccttctatgcctcaaagcgaacattcatcatcctaaccaaggggaagaccatctttaga
ttctcaacgacacctgcaatgtacttgcttagtccatttaacctcctgaggagaattgcc
attaaagttctaattcattcattatttagcttgttcatcatgtttaccattctagctaac
tgcatcttcatgacaatgagcgacccagaaccctggactaaaaatgtagagtacgccttc
actgggatctacacctttgaatcaatgataaagatctttgcccgaggatttgtaattgat
tccttcaccttcctccgagacccttggaactggctggatttcagtgtcatcacaatggca
tacctgactgaatttgtggatttgggtaacgtttctgctttaagaacctttcgtgttctg
cgggcactgaaaaccatcacagttattccaggactaaaaaccattgttggagctctgatc
caatcggtgaagaaattagcggacgtgatgattctgaccgttttctgtttaagtgtgttt
gcacttattggtctccagctgtttatgggaaatttgaaaaacaaatgtgtgatatggcct
ccatcagacgaattattttacaatagtaccttcatccagaacgggtcagggatggacaat
gataccctgattggtaaccacaatggcagttttaaccaacatgcctacattaataatgaa
gaaaatcagtacttccttgaagattctcttgatgctctgctatgtgggaatgcctcagat
gctgggaaatgtcccgatggttacatgtgcatgaaagctgggagaaaccctaactatggc
tacaccagttacgatacgtttggttgggcatttctgtcactttttcgactaatgacgcag
gacttctgggaaaatctattccaattgaccctgcgtgctgctgggaaaacctacatgatc
ttctttgtgatcatcattttcatcgggtcgttttacctgatcaacttaattctggctgtc
gtggcgatggcttatgccgaacaaaatgaagccaccctccgggaggctgaggaaaaggag
aaggaatttcaagagattatggaaagcataaagaaacaccaggaagagcaagaagctcag
ctacaagctgccaaagaccaggtgggcagccaatactcactggcgagtgatggagtacgg
aagaaagacgacgccgtcaatggcggtatcgaggatgggcacggcctgggagatggagga
gagagtcagcgagactcactcaccgtcccgtacaccaagtcaaccgtatccattacagtg
aatggagttgtttcacaagatggcgaaaatggcacgacgcctaacggcagggttaagcca
cacactgacacacataaagtcgactatagtgtatctgtgagggatagtgatgacgagatc
tctggatcgaaacgtacctccatgtttctcgaagagccagcatcctcaaagaaaactggg
agtatggccagtgtgcacagcactgtcacactcaatgagctggaggaggcacatcagaaa
tgtcctccgtggtggtacagatttgccaacagatttctaatctgggattgctgtcctctc
tgggtgaaggttaaggggatcttgaagattattgtgatggacccatttgtggatctgggg
atcacgatatgcattgtgctgaacactctctttatggctatggagcactaccccatgtca
gagagctttgaaaacatgctgtctgtggggaatctggtattcacagggatcttcactgct
gaaatggtgttcaaactactcgctctggatccttactattactttcaagtgggctggaac
atatttgacagtatcatcgtgaccctcagcttggttgagcttggactggcgaacgtacag
ggattgtcagtgctgcgttcattcagattgttgcgggttttcaagcttgccaagtcttgg
ccaactctgaacatgctgataaagatcatcggtaactccgtgggagcactggggaacctg
acgctggtcctagctatcattgtcttcattttcgccgtggttgggatgcagctctttggc
aagatgtacaagcaatgcgtctgcaagatttccgaagattgtttacttccgcgctggcat
atgttcgacttcttccattcgtttctcatcgtgttccgcatcctctgcggggaatggatc
gagacaatgtggagctgcatggaggtggccgggcggcccatgtgcctcatcgtcttcatg
atggtcatggtgattggtaacctggtggtgcttaacctcttcctggccttgctgttaagc
tccttcagcgctgataacctctcagcatccgatgacgacaatgagatgaataacctacaa
attgcaatgaacagaattaccagaggcatagactttgtcaaaggtttttttttcggcata
ttacgaaggaaaaaaaatgtccaggaaaataaacaattggaggacttttctccgtctaaa
gacgggattcttgattttaaccacacggactcagagagtaaaaaggatgagatgtctaag
cttgatggagttaagctgaagaaaggggagcaccaagatggcatcgtagccaacacacac
ctgactgttagagtccccattgctgaaggtgaatctgatactgaatatgatgaacaaagc
tctgatgcagacaccgaggatgccagcatggttctcgaacagttaaaagtgaacattggt
tcttctcagtgcagtactgtcgatttgaatgttgaagaaaaggaggaggacattaaagaa
gaggttcccgaagccgacgagccagtggagtgtttaacggaaggctgtttgagaacatgc
ccctgcctggaacttgatgtaacgagtgaacgggggaagatgtggtggaacttgaggaaa
acctgtttcaagattgtggagcacaactggtttgaatcattcatcatcttcatgatcttg
ctcagtagtggtgctctggcttttgaagacatctacatagaagacaggaagacaattaag
atactgcttgaatatcttgaccaagtatttacatacgtctttgtggtggaaatgttactc
aaatggactgcttatggattcaaaacatacttcaccaacgcatggtgttggcttgacttt
atgattgttgacgtgtcgttgatcagcctggctgcaaagatccttggttatgatcaatta
ggacccatcaagtccctccggactctgagagccctgagaccactcagagctttgtctcgc
tttgaggggatgcgggtggtcgtcaatgcattggtcggagctattccatccattatgaat
gtgctgctggtttgccttatcttctggctgattttcagtatcatgggagtgaacatgttt
gccgggaagtatttcaaatgtataaacaccacagactctacaatgttccctattgatgta
ataaataacaagacggattgtgagctttacatttcaatgtatcccgatgaagtccgatgg
gtcaatttgaaggtgaactttgacaatgttggtcaggggtacctatccttgctgcaagtg
gcaacctttaaaggctggatggagataatgtatgctgctgttgactctcgagaggtgacg
caacagccatcctatgaaattaacctctacatgtacatgtactttgtcatcttcatcatc
ttcggggcattcttcaccctcaacctcttcattggtgtaattattgacaactttaaccaa
caaaagaaaaagtttggagggaaagatatattcatgacggaagaacagaagaaatattac
aacgccatgaaaaaacttggctcgaagaaaccacaaaagcccatcccaagaccaaataat
aaatgtcaaggagccttctatgatttggtcagcaatcaagcctttgatatatttattatg
attctcatctgcctcaacatggtgaccatgatggtggaaactgacgaacaaagcaaagaa
gcagaagaaattctatactgggtcaacctggtgtttattgttgtctttacctgtgaatgc
tttctcaagatcattggcctgagatactacttcttcaccatcggatggaatatttttgat
tttgtggtggtgattctttctgtcgtaggtattatgctggcagatatcatagagaagtac
tttgtatcacctaccctgttcagagttattaggttggccagaatcggtcgtgtccttcga
cttatcaaaggagcaaaaggaattcgaactctactgttcgccttgatgatgtctctgccg
gctttgttcaacattgggcttttactctttctggttatgttcatctactccatatttggg
atgtccaactttgcctacgtgaagaaagaagcgggcatcgacgacatgttcaactttgag
acgtttggcaacagcatgatttgcttgttcatgattaccacgtcggcaggctgggatggg
ctgcttcttcccatcatgaacagcagtccccccgactgcgaccccaatgcgtacaaccca
ggcaccaccgtaacggggaactgcggcaatccattgatgggggtcgttttctttgtcagc
tacatcatcgtctccttcctgattgtggtgaacatgtacatcgccatcatcctggagaac
tttaacgtggcaactgaggagagtgctgagcctctgtgcgaggatgactttgaaatgttc
tacgaggtctgggaaaagtttgatccggaagccacgcaatttgtcgagtacgctaggcta
tccgactttgccgacactctgaaggagccattgaggattgccaaaccgaacaagatcaaa
ctgattaccatggacctaccgatggtgatcgatgacaaaatacactgcctggacatactc
tttgcattgaccaaggaagtcttgggggaatctggagaaatggacgcgctgaaggagtca
atggaagagaagttcatggccgccaacccttccaaggtttcgtatgaacccatcaccacc
acgcttcgaaggaagcaagaggaggtttgtgcgatcaaaattcaacgagctttccgtcgt
cacatgctgaagcgtactgtcaagcacgcatcttacatgtaccgccaaagcctagttgac
tccatcctacccgatgaagagcccccagagaaggaagggttggtcgctgtcaggctaagt
caaaactatggtaaaggccaacctgaccaggaatgtcccccaaccctagctcaagaaaca
ccaacaactccgcaaggtgtgacggatattcccctagaatcagcggtgactgctctagaa
ggagaagtacctaccgatgaaccaacagactggtttcctgaatcaaaggacattagagag
tcggttgtatag
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