Leucoraja erinacea (little skate): 129711946
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Entry
129711946 CDS
T09122
Name
(RefSeq) TNF receptor-associated factor 2-like isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
leri
Leucoraja erinacea (little skate)
Pathway
leri04010
MAPK signaling pathway
leri04137
Mitophagy - animal
leri04141
Protein processing in endoplasmic reticulum
leri04210
Apoptosis
leri04217
Necroptosis
leri04621
NOD-like receptor signaling pathway
leri04622
RIG-I-like receptor signaling pathway
leri04920
Adipocytokine signaling pathway
leri05132
Salmonella infection
leri05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
129711946
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
129711946
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
129711946
09143 Cell growth and death
04210 Apoptosis
129711946
04217 Necroptosis
129711946
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
129711946
04622 RIG-I-like receptor signaling pathway
129711946
09152 Endocrine system
04920 Adipocytokine signaling pathway
129711946
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
129711946
09171 Infectious disease: bacterial
05132 Salmonella infection
129711946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leri03019
]
129711946
04121 Ubiquitin system [BR:
leri04121
]
129711946
Enzymes [BR:
leri01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129711946
Messenger RNA biogenesis [BR:
leri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
129711946
Ubiquitin system [BR:
leri04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
129711946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
TRAF3_RING
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_5
Sina_ZnF
zf-RING_5
MATH
zf-RING_UBOX
Synaptobrevin
Motif
Other DBs
NCBI-GeneID:
129711946
NCBI-ProteinID:
XP_055515968
LinkDB
All DBs
Position
31:complement(13756432..13796345)
Genome browser
AA seq
550 aa
AA seq
DB search
MAARSERSPPNSLESQALGNRIGFPKEILAAKVEGKYLCFECHGILRKPFQAQCGHRYCA
SCLKGIVSNGPQKCAACIEENIYEEPLSLLDANSAFPDNAARRELDNLPAVCSNEGCPWK
GTIKDYEAEHEGRCEYVLMPCEACSKKVRQVDLSRHLERECPERNLNCKFCKMSFHHKDI
KAHDEICSKYPLMCEWCGKKKISREKYADHIRTCGKVKLLCRFHQIGCEMAVEKEKLLEH
ENQCTVEHLRMMLPQIMELKNATGGLQPTSLQQGNVKVNQLLTSVRQIEESIRPFYSLGQ
QAASSEMLGKSEKLDNVEKRCEALKHQAETFENIVCVLNREVERASVSMAAYEQQHKLDQ
EKIEDLLAKVRQMDRVSALKDLAIAELEVKLQALEFSTHNGVFIWKIGDFSRRRQDAKSQ
RSPAIFSPAFYTSKYGYKMCMRIYLHGDGVGRSTHLSLFFVIMKGNFDGLLRWPFKQKVT
LMLLDQTNREHIIDAFRPDVTSSSFQRPVNEMNIASGCPLFCSLSKLDSNNNYLVDDSIF
IKAIVDLTDL
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaaggagcgagagaagcccaccaaattcattagaatctcaagcgctggggaat
cgtattggttttcctaaagaaattttggcagctaaggtcgaggggaagtacctgtgcttc
gagtgtcacgggatcctgaggaaacccttccaggcacaatgtggtcaccgctactgtgcc
tcctgtctgaaggggattgtcagcaatggcccacagaagtgtgcagcctgcattgaagag
aacatttatgaagaaccactgtctcttctggatgccaattcagctttcccagacaacgcg
gctcgcagggaattggacaacctgcctgcagtttgtagcaatgagggctgcccttggaag
ggcaccatcaaggactatgaggctgaacacgagggaaggtgtgagtatgtcctgatgcct
tgtgaagcgtgcagcaagaaggtgcgtcaggtcgatctatcccgccatctggaacgagaa
tgtcctgaaagaaacctcaactgcaagttctgcaaaatgtccttccaccacaaggatata
aaggctcacgatgaaatctgttccaaatacccattaatgtgtgaatggtgtgggaagaaa
aagatttcaagagaaaagtatgcagatcacattcgaacatgtgggaaggtgaagctcctt
tgtcgcttccaccagattggctgtgaaatggcagttgagaaggagaaattacttgagcac
gagaaccagtgcacagtagagcacctccgtatgatgctgccgcaaatcatggagttaaag
aatgcaacaggcggcttgcaacccacgagtctgcagcagggcaatgttaaagtaaaccag
ctgctgacttcagttcgacaaatagaagaatcaattaggcctttctactctctcggtcag
caggccgcctcctctgagatgttggggaaatccgaaaagctagacaacgtcgaaaagcgg
tgcgaagctctcaaacaccaagctgaaacgtttgaaaatattgtttgtgttctcaaccgt
gaagtggagagagcctctgtaagcatggcagcgtatgagcagcaacacaaactagaccag
gagaagattgaagacctgctggcaaaggtgcgtcagatggaccgtgtgtcagcactgaag
gacctggcgatagcagagctggaggtgaagctgcaagccctcgagttcagcacccacaac
ggcgtcttcatttggaagataggagatttcagcagaaggcgacaggatgccaaatcccag
aggtcaccagccatattctcaccagctttctacaccagtaagtacggatacaagatgtgc
atgcgtatctacctgcacggtgacggcgtgggtcgcagcacccacctgtccctcttcttt
gtcattatgaagggaaacttcgacggattgctcagatggccattcaaacaaaaggtgaca
ctcatgctgctggaccagaccaatcgtgagcacatcattgatgcattccgaccggacgtc
acctcatcctctttccagagaccagtcaatgagatgaacatcgccagtgggtgccctctc
ttctgttcactcagcaaactggacagcaataataattatttggttgatgacagcattttc
atcaaggctattgtggatttaacagacctgtaa
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integrated database retrieval system
