Lentibacillus sp. CBA3610: Len3610_19760
Help
Entry
Len3610_19760 CDS
T08606
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lex
Lentibacillus sp. CBA3610
Pathway
lex03030
DNA replication
lex03410
Base excision repair
lex03420
Nucleotide excision repair
lex03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Len3610_19760 (ligA)
03410 Base excision repair
Len3610_19760 (ligA)
03420 Nucleotide excision repair
Len3610_19760 (ligA)
03430 Mismatch repair
Len3610_19760 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lex03032
]
Len3610_19760 (ligA)
03400 DNA repair and recombination proteins [BR:
lex03400
]
Len3610_19760 (ligA)
Enzymes [BR:
lex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Len3610_19760 (ligA)
DNA replication proteins [BR:
lex03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Len3610_19760 (ligA)
DNA repair and recombination proteins [BR:
lex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Len3610_19760 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Len3610_19760 (ligA)
MMR (mismatch excision repair)
DNA ligase
Len3610_19760 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Len3610_19760 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
RNA_pol_A_CTD
BRCT_2
RNA_ligase
HHH
Zn_ribbon_NUD
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
QKY71479
UniProt:
A0A7H8SAI8
LinkDB
All DBs
Position
3963819..3965822
Genome browser
AA seq
667 aa
AA seq
DB search
MEKQQAQQKIAELRKLLNQYGHEYYVLDNPSVPDSEYDRKMQELLKLEESFPELVTADSP
SQRIGGEPLDAFQKVQHNVPMMSLGNAFNESDLRDFARRAAQLTDEPISFVCELKIDGLA
VSLTYENGTFVRGATRGDGTTGEDITSNLKTIRSIPLSIQEENTLEVRGEAFMPHQSFLK
MNEQRQANDEEPFANPRNAAAGSLRQLDPKIAGKRNLDIFLYGVGEWQAGSLESHSERLD
YLQELGFKTNPEWLKCETIDEVIEFVTYWEQKRPELNYEIDGVVIKVDNLTQQEELGFTA
KNPRWAIAYKFPAEEALTTLREIELSVGRTGVVTPTAILDPVRVAGTTVKRASLHNEDLI
REKDVRLGDQVVIKKAGDIIPEVIRPVEEKRTGDEKEFFMPDDCPECGSELVRLEEEVAL
RCMNPNCPAQLKEGLIHFVSREAMNIDGLGEKVIIQLFRENLVHTIADLYRLQREDLLQL
ERMGEKSTDNLLKAIASSKENSLERLLFGLGIRFVGSKAARTLAAQFETMEKLQEATFED
VVAINEMGDKMADSIVSYFAGDEVKSLLNELKELGLNMKYKGAKQQEIEDDTAFSGKTVV
LTGKMNDFTRSEAKALVEKLGGSVTGSVSKNTDILIAGEDAGSKLDKAEKLGVTIWNEQQ
LRDVTDD
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaacaacaagcacaacagaagattgctgaactaaggaaattattaaaccaatat
ggtcatgaatattatgtcctggataacccaagtgtcccggattcagaatatgaccggaaa
atgcaggaactccttaaactcgaggaatcattccctgaattggtcactgccgattcacca
tcgcaacgaatcggcggcgagccactggatgcgtttcagaaagtccagcacaatgtaccg
atgatgagcctcggcaatgcgtttaacgaaagtgatttgcgtgatttcgccagacgtgct
gctcaactgaccgatgagccgatttcatttgtatgtgagctgaaaattgacggtctggcg
gtatcactcacttatgaaaatggcacgtttgtccgtggtgcaacccgtggtgatggaaca
accggtgaagatatcacgagcaatttgaagaccattcgcagcataccactttccattcag
gaggaaaatacgcttgaggtccgtggtgaagcgtttatgccgcatcaatcatttttgaag
atgaacgaacagcgacaagcgaacgatgaagaaccattcgccaacccacgcaatgcggct
gcggggtcactaaggcagcttgatccaaaaatcgcgggcaaacggaatctggatattttc
ctgtatggtgttggtgaatggcaagcaggcagcctggaatcccacagtgagcgtctggat
tacttgcaggaactcggatttaaaacaaatccggagtggctgaagtgcgagacgattgat
gaggtcatcgaatttgtgacgtactgggagcaaaagcgtccggaattaaattatgaaatc
gatggggttgtcattaaagtcgataatctcacacagcaggaagagctgggcttcactgcc
aaaaatccgcgctgggcgattgcctacaaatttcccgctgaagaagcattgacgacactt
cgcgaaatcgaactgagcgttggccggaccggtgttgtgaccccgacggctatattggac
cctgtcagagtggccggtacaacggtcaagcgtgcctcattgcataacgaggatctgata
cgggagaaggacgtccgtcttggtgatcaggttgtaattaaaaaagccggtgatatcatt
ccggaagtcattcgccctgttgaagaaaagcggacaggtgatgagaaggaattctttatg
ccggatgattgtccggaatgcggcagtgaactcgtccgtcttgaagaagaagttgcgctg
cgttgtatgaacccgaactgccctgcgcaattaaaagaaggattgatccattttgtttcc
cgggaagccatgaatattgacggtctgggtgaaaaagtgattattcagctgttccgggaa
aatctggttcataccattgccgatttatatcgattacaacgtgaagacttattgcaactg
gagcggatgggagaaaaatcaaccgacaatctgcttaaggcgatagcgtcgtcaaaagag
aattcgctggaaagactgttgttcgggcttggcatccgttttgtcggttccaaagctgcg
agaacacttgccgctcaatttgaaacgatggaaaaactgcaggaagcaacgtttgaagac
gttgtggccatcaacgagatgggcgacaaaatggctgattcaattgtgagctattttgca
ggagacgaagtgaaaagcctgctcaatgagctgaaagagctcggtctcaatatgaaatac
aaaggtgccaaacagcaggaaattgaagacgatacggcattctccggcaagacagttgtt
ctgacagggaaaatgaatgattttacacgatcagaggcaaaggcattggttgagaagctt
ggcgggtctgtcaccggcagtgtcagcaaaaacacggatattctcattgctggggaggat
gccggttcaaagctggacaaagcagaaaaactcggtgttaccatttggaacgaacaacag
cttagagacgtcacagatgattaa
DBGET
integrated database retrieval system
