KEGG   Laceyella sacchari: C1X05_14035
Entry
C1X05_14035       CDS       T05304                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
lfb  Laceyella sacchari
Pathway
lfb03030  DNA replication
lfb03410  Base excision repair
lfb03420  Nucleotide excision repair
lfb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lfb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    C1X05_14035
   03410 Base excision repair
    C1X05_14035
   03420 Nucleotide excision repair
    C1X05_14035
   03430 Mismatch repair
    C1X05_14035
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lfb03032]
    C1X05_14035
   03400 DNA repair and recombination proteins [BR:lfb03400]
    C1X05_14035
Enzymes [BR:lfb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     C1X05_14035
DNA replication proteins [BR:lfb03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     C1X05_14035
DNA repair and recombination proteins [BR:lfb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     C1X05_14035
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     C1X05_14035
   MMR (mismatch excision repair)
    DNA ligase
     C1X05_14035
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      C1X05_14035
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH Nlig-Ia 5_3_exonuc HHH_8 BRCT_2
Other DBs
NCBI-ProteinID: AUS09829
LinkDB
Position
complement(2840692..2842707)
AA seq 671 aa
MNLEQAQARVQALHDILNEHNYRYHVLDQPTISDAEYDQLLRELIELEREFPELSTPDSP
TQRVGGEILPHFEKVEHLSPMLSLGNAFNEQDLREFDERVRKAAGDKPVRYVCELKIDGL
AVSLRYEDGRFVLGATRGDGTVGEDITQNLKTIRSLPLKLRQPVSLEVRGEAYMPRAAFA
RLNSVREERGEALFANPRNAAAGSLRQLDPKLAAERTLDIFLYGIGQNEGLSFTTHTEAL
AFLSELGFKVNPERRTVEGVEEMLQYVQEWQERRPDLAYDIDGIVIKVDDLALREEMGFT
AKSPRWAIAYKFPAEEAVTRLEEIELNVGRTGVVTPTAVLQPVSLAGTTVKRASLHNEDM
IREKGLMLGDHVIVKKAGDIIPEVVAVLTDKRTGDERPFTMPTHCPECESRLVRLEGEVA
LRCINPACPAQTREGIIHFVSRGAMNIEGLGEKVVTQLFERGLVRSVADLYYLKSEDLLR
LERMGEKSVANLLRAIEASKSNSLERLLFGLGIRFVGAKGAKILAQHYGSMEALLSATEE
ELTQLEEIGPKMAASITTYMKKPEVRETLRRLAEAGVNMHYTGPAPVRAGDGAMESPFAG
KTVVITGTLERMSRKEASELLESLGAHVTGSVSKKTDLLIAGEKAGSKLDKANKLGITVW
DEETFLAHLPK
NT seq 2016 nt   +upstreamnt  +downstreamnt
ttgaatttggaacaagcccaagcacgcgtacaagcgttacacgacatactgaatgaacac
aattaccggtatcatgtgttggaccaaccgaccatatctgacgcggaatacgatcaattg
ctacgggagttgattgagttagagcgtgagtttccggagctttccacccctgattcgccg
acccagcgtgtaggtggggaaatcttgcctcattttgagaaggtggagcacctttctccg
atgctcagtctgggtaacgccttcaacgaacaagacttgcgggaatttgatgagcgggtg
cgaaaggcggccggagacaagccggtgcggtatgtatgcgagttgaaaatcgacggtttg
gccgtctccctgcgatacgaggatggccggtttgtgctcggcgctactcgcggggatgga
acggtgggggaggatatcacgcaaaacctgaaaacgatccgttcgttgccgcttaagttg
cgccagccggtcagcttagaagtgcgcggggaagcgtacatgccgcgggccgcgtttgcg
cgtctgaatagcgtgcgggaggagcgtggggaagccttgtttgccaatccgcgcaatgcc
gccgctggttccctgcggcaattggaccccaagctggccgcagaacggacgttggacatc
ttcttatatgggattgggcagaacgagggactctctttcacgacccataccgaagcattg
gcattcctgtccgaactcggatttaaagtgaaccccgaacggcggacggtagaaggtgtc
gaagagatgctccagtacgtgcaagaatggcaggagcgccgtcctgacctggcgtatgat
atcgatggcatcgtgatcaaggtggacgatttagcgctgcgggaagaaatgggcttcact
gccaaaagtccgcgctgggcgattgcctacaaattccccgccgaagaggcagtcacccgg
ctggaggagatcgagctgaatgtggggcgcaccggcgtcgtcacgcccaccgcggtgcta
caaccggtttcgctggcgggaacgacggtcaaacgggcttcgttgcataatgaagacatg
attcgggaaaagggtttgatgttgggagaccatgtgatagtgaaaaaagcgggcgacatc
attccggaagtggtggccgtcctcaccgacaagcggacaggggacgaacggccctttacc
atgccgacgcactgcccggaatgcgagagccggctggtccgcctagagggggaagtggcc
ctgcgctgtatcaatcccgcatgcccggcgcaaacacgggaagggatcattcattttgtg
tcgcgcggcgcgatgaacatcgagggtctgggcgaaaaagtggtgacccaactgtttgag
cgggggttagtgcgcagtgtggctgatctatactatctgaaaagcgaagatctgttgcgt
ttggagcgcatgggcgaaaaatcggtggccaatctcctgcgcgccatcgaggcgagcaag
tctaactcgctggagcggctgttgtttggcttgggcattcgctttgtgggggccaagggc
gccaagatcttggcgcaacattacggctccatggaagcgttgctttcggcgacggaggaa
gagttgacccaattggaagagatcggtccgaagatggcggctagcattaccacttacatg
aagaagccggaagtgcgcgagacgctgcgtcgcttggcggaagcgggcgtcaatatgcat
tatactggccctgcacctgtccgagctggggatggggcgatggagagcccatttgcgggc
aagaccgttgtcatcaccggcacgttggagcgcatgtcgcgcaaggaagcatccgaatta
ctggagtcgttaggcgcccatgtgactggcagtgtgagcaagaaaactgacctgcttatc
gcaggcgagaaggcaggctccaaattggataaggcgaataagttggggatcacggtctgg
gacgaagagacattcttagcccatttgccgaagtaa

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