Ligilactobacillus faecis: QFX10_06895
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Entry
QFX10_06895 CDS
T08999
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lfd
Ligilactobacillus faecis
Pathway
lfd03030
DNA replication
lfd03410
Base excision repair
lfd03420
Nucleotide excision repair
lfd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QFX10_06895 (ligA)
03410 Base excision repair
QFX10_06895 (ligA)
03420 Nucleotide excision repair
QFX10_06895 (ligA)
03430 Mismatch repair
QFX10_06895 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lfd03032
]
QFX10_06895 (ligA)
03400 DNA repair and recombination proteins [BR:
lfd03400
]
QFX10_06895 (ligA)
Enzymes [BR:
lfd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QFX10_06895 (ligA)
DNA replication proteins [BR:
lfd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QFX10_06895 (ligA)
DNA repair and recombination proteins [BR:
lfd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QFX10_06895 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QFX10_06895 (ligA)
MMR (mismatch excision repair)
DNA ligase
QFX10_06895 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QFX10_06895 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
zf-NADH-PPase
HHH
HTH_45
Motif
Other DBs
NCBI-ProteinID:
WGN88790
LinkDB
All DBs
Position
1516907..1518919
Genome browser
AA seq
670 aa
AA seq
DB search
MEAKEQQEIVTLRERLTKWSKEYYELDRPTVEDHVYDQAYRRLVELEAKYPESITADSPT
RRVGGQVANGFEKVTHSIPMLSLGDVFSKAELAEFVKKLTESIGETVAFDCELKIDGLAI
SLVYEKGVLVKGSTRGNGLIGEDITANLKTIKAIPQRLSEPIDVEVRGECYMPKKAFVNL
NQSREAEGRSVFANPRNAAAGSLRQLDTAETKKRQLSVFMYYLMEPEKFGITTQSQALAQ
LKTWGFPVNEEAKVTADLTEIERYLDEYQTKRADLPYEIDGIVLKADPFSVQAELGNTVK
VPRWAIAYKFPPDEQETIVRQIEWTVGRTGVVTPTAVMDPVVLAGTTVSRASLHNPDYLQ
QKDIRIGDTVKLHKAGDIIPEISEVVLAKRPKDAEVYQIPTVCPECGAKLVHLDDEAALR
CIDPQCPALVKESLTHFASRNAMNIEGLGPKIIEQLFDKGLIKDASGLYFLTFEELLTLE
KFKERAANNLLQAIEQSKQNSLERLLFGLGIRHVGAKAALILAENFQEIEQLRQAKFEDI
IKLDSIGEKIADSVVTYFKNEQVTELLAEFKRAGVNLSFLGQTRAEKAQLVQDDPLNGLT
VVLTGKLTNITRSEAKTLLEAHGAKVTGSVSKKTDLVIAGADAGSKLVKAQDLGIKVIDE
AEFLRQTEEK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaagctaaggaacaacaagagatcgttactctcagagagagactgaccaagtggagc
aaagaatattacgaattagatcgtccaacagttgaagatcatgtctacgatcaagcttat
cgacgtttagttgaacttgaggctaaatatcctgaaagcataacggcagattcgccgact
cgacgtgttggaggacaagttgcaaatggttttgaaaaagttacccattcgatcccgatg
ctttcattaggtgatgttttttcgaaggccgagttagctgaattcgtcaaaaaattgact
gaaagcataggtgaaacagttgcttttgattgcgaattgaagatcgatggtttagcgatc
tctttagtttatgaaaaaggtgttttagtcaaaggttcaacacgtggaaatggtttgatc
ggtgaagatatcacagctaatttgaaaaccatcaaggcgatcccacaacgtttgtccgag
ccaatcgatgttgaagttcgcggtgaatgctatatgcctaaaaaggctttcgtcaatttg
aaccaaagccgtgaagcagaaggacgctctgtttttgctaatccgcggaacgcagcagct
ggctcattgcgtcaattagatacagctgagactaaaaaacgccaattaagtgtttttatg
tattatttgatggaaccagaaaaatttgggatcacaactcaaagtcaagcgctggctcaa
ttaaaaacttgggggtttccagtcaacgaagaggcgaaagtgactgcggatctgactgag
atcgaacgctacttagatgaatatcaaactaaaagggccgatttaccttatgagatcgat
gggatcgttttgaaagcagatcctttctcagttcaagctgagttagggaatacagtcaaa
gttccacgctgggcgatcgcctataaatttcccccagatgaacaagaaacgatcgtgcgt
cagatcgaatggacggtcggacgcacaggggtcgtgacgccgactgctgtgatggatcca
gtggttttagcgggaacaacggtatcgcgggcttcattgcataatcctgattacttgcaa
caaaaagacattcggatcggggatactgtcaaattgcataaagctggcgatatcattccc
gagatctcagaagtcgtcttagctaaacgccctaaagatgctgaagtttatcagatcccg
acggtctgtccagaatgtggtgctaaattagttcatttagacgatgaagcggccttgcgt
tgtatcgatcctcagtgcccagctttagtaaaagaaagtttgacgcattttgcttcgcga
aatgcgatgaatattgaaggcttaggtccaaagatcatcgaacaactttttgataaaggc
ttgatcaaagatgcttctggtctttacttcttgacctttgaagagctcttgacacttgaa
aaattcaaggagcgtgctgccaataatttattacaagcgatcgaacaaagtaagcaaaac
tctttagaacgtttattatttggtttagggatccgccatgtcggggcgaaagcggctttg
atcttagctgagaatttccaagagatcgaacaactgagacaggcaaaatttgaagatatt
attaaattagactcgatcggtgaaaaaattgctgattcggttgtaacatattttaaaaac
gaacaagttacagaactcttagctgagttcaagcgtgctggggtaaatttgagcttttta
ggtcaaactagagctgaaaaagcacaacttgttcaagatgatccgctaaacggtctaact
gtcgttttgacaggtaagcttaccaatattacacgctcagaagctaaaacgctcttagaa
gcacatggagctaaagttaccggaagtgtttctaagaagaccgatcttgtgatcgccggc
gctgatgcaggtagtaagctggtcaaagcgcaagaccttgggatcaaagttatcgatgaa
gcagaatttctaaggcaaacggaggaaaaatga
DBGET
integrated database retrieval system
