Companilactobacillus farciminis: LF20184_02910
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Entry
LF20184_02910 CDS
T06098
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lfm
Companilactobacillus farciminis
Pathway
lfm03030
DNA replication
lfm03410
Base excision repair
lfm03420
Nucleotide excision repair
lfm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LF20184_02910 (ligA)
03410 Base excision repair
LF20184_02910 (ligA)
03420 Nucleotide excision repair
LF20184_02910 (ligA)
03430 Mismatch repair
LF20184_02910 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lfm03032
]
LF20184_02910 (ligA)
03400 DNA repair and recombination proteins [BR:
lfm03400
]
LF20184_02910 (ligA)
Enzymes [BR:
lfm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LF20184_02910 (ligA)
DNA replication proteins [BR:
lfm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LF20184_02910 (ligA)
DNA repair and recombination proteins [BR:
lfm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LF20184_02910 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LF20184_02910 (ligA)
MMR (mismatch excision repair)
DNA ligase
LF20184_02910 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LF20184_02910 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
RTT107_BRCT_5
BRCT_2
Mer2
Motif
Other DBs
NCBI-ProteinID:
ATO45770
LinkDB
All DBs
Position
621742..623757
Genome browser
AA seq
671 aa
AA seq
DB search
MADLTKEQASQELDKIRPQLNSWRDAYYTKDAPVVEDNVYDKLYNRLLEIEQMYPELVTP
DSPSQQVGDVTLPDFNKVTHDIPMLSMGDVFSEEELAEFNDRIEKNVGHEVDYNVELKID
GLSLSLIYENGILVQGSTRGNGTIGENVTENVKTIKDIPQKLSRPLSIEVRGECFMSKKE
FLRLNQERENEGQQVFANPRNAAAGSLRQLDPKVTASRKLDTFMYTIVTFDGMNVTTQHQ
ALETLQELGFNVNPTAQVTTGLKGVQNFIEHYGEVRDDLDYGIDGVVLKVDDLALQQQLG
NTVKVPRWEIAYKFPPEQSETVVRDITWTIGRTGVLTPTAVMDPVQLAGTTVSRATLHNE
DMIRQKDVRIGDTVLLHKAGDIIPEVSQVVLKKRPKDSVPAVIPTHCPYCDSELIHLEDE
VALRCINPKCPAQVKEQLTHFASRNAMNIDGLGPKIIEQLYTKELVKDVADIYKLTADDL
ATLDGFKEKSINNLLTAIDNSKSNSVERLIFGLGIRHVGAKAGRILAENFGSLDELMSAS
KEEILEVNTMGEIIADSIVTYFANDDVKKLINELKSVSINMNFIGSSNSNETNSHFTDKI
IVITGTLQNYKRSQLSEKLENLGAKVTSSVTKKTDILIAGEKAGSKLTKAQQLGTQIIDE
TTLSEYLDDEE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggctgatttaactaaagaacaagctagtcaagaattagacaaaatccgtccccagcta
aacagttggcgtgatgcttattacactaaagatgctccggtcgtggaagataacgtctac
gataagttatacaatcgtttattagaaatagaacaaatgtatccggaattagtaactccc
gattcaccttcgcaacaagttggtgatgtgactttacctgatttcaataaagtaacccat
gatattccaatgctttcaatgggggatgtcttttctgaagaagaattagcagaatttaat
gaccgaattgaaaaaaacgttggacatgaagttgattataatgttgaattaaaaattgat
ggtttatcactgtcattaatttatgaaaatggtatcttagttcagggctcaactcgtggt
aacggaacaatcggcgaaaacgtgacagaaaatgtcaaaactatcaaagatattcctcaa
aaactcagtcgtccactttcaatcgaagttcgtggcgaatgcttcatgtcgaaaaaagaa
tttctacgtttgaatcaagaacgtgaaaatgaaggtcaacaagtctttgctaatccaaga
aatgctgctgccggtagtcttcgtcaactcgatcctaaggtaacggcttcaagaaaactc
gatacatttatgtatacgatcgtaacttttgatgggatgaatgttacaactcaacatcaa
gcactcgaaacgttgcaagaacttggctttaacgttaatccaactgctcaagtaacgact
ggtttaaaaggtgtgcaaaactttattgaacattacggcgaagttcgtgacgacttagat
tacggtatcgatggggttgttttgaaggtcgatgatttggccttgcaacaacagcttggg
aatactgtcaaagtgccacgttgggaaattgcctacaaattcccaccagaacaatcagaa
acagtagttcgtgatattacttggacaatcggtcgaacaggggttttaacacctacagcg
gtaatggatccagttcaattagcaggaacgactgtttccagagcaactttgcacaatgaa
gatatgattcgtcaaaaggatgttcgtattggcgataccgtacttttgcacaaggctggc
gacatcatcccagaagtttcacaagtagttttgaagaaacgtcctaaagattcagtacca
gcagtgattccaacgcattgtccatactgtgattcagaattgattcacctagaggatgaa
gtagcgttgcgttgcatcaatcctaagtgtccggctcaagtcaaagaacaattgactcac
tttgcttctcgaaatgcgatgaatattgacggcttaggacctaaaattatcgagcagctt
tatacaaaagaattggttaaagatgtcgctgatatttataagctgacggctgatgattta
gccactttagatggtttcaaagaaaaatcaattaacaacttattaacagcgattgacaac
tccaagagtaattctgttgaacgcttgatttttggcctcgggatcagacatgtcggtgct
aaagctggtcgaattttggccgagaactttggcagtttggatgaattgatgtcagcttct
aaagaagaaatcctagaagttaacacgatgggtgaaattattgctgacagtattgtgact
tattttgccaatgatgatgttaaaaagttgataaatgaactaaaatcggtaagtattaac
atgaattttattggtagttcaaattctaatgaaacaaatagccattttactgataaaata
attgttataaccggaactttgcaaaattataaacgttcgcaattgtctgaaaagcttgag
aacctcggtgctaaggtcactagttcagttactaaaaagactgacattttgattgctggt
gaaaaagctggtagtaaattgaccaaggctcagcaattaggaacgcaaattattgatgaa
acaacattgtctgaatatttggatgatgaagagtag
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