Limosilactobacillus fermentum CECT 5716: LC40_0947
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Entry
LC40_0947 CDS
T01958
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lfr
Limosilactobacillus fermentum CECT 5716
Pathway
lfr03030
DNA replication
lfr03410
Base excision repair
lfr03420
Nucleotide excision repair
lfr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LC40_0947
03410 Base excision repair
LC40_0947
03420 Nucleotide excision repair
LC40_0947
03430 Mismatch repair
LC40_0947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lfr03032
]
LC40_0947
03400 DNA repair and recombination proteins [BR:
lfr03400
]
LC40_0947
Enzymes [BR:
lfr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LC40_0947
DNA replication proteins [BR:
lfr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LC40_0947
DNA repair and recombination proteins [BR:
lfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LC40_0947
NER (nucleotide excision repair)
GGR (global genome repair) factors
LC40_0947
MMR (mismatch excision repair)
DNA ligase
LC40_0947
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LC40_0947
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Hydrolase_6
DUF3783
AAA_lid_10
Motif
Other DBs
NCBI-ProteinID:
ADJ41518
LinkDB
All DBs
Position
complement(1681050..1683089)
Genome browser
AA seq
679 aa
AA seq
DB search
MSKQEAVSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQRF
PDLVVPDSPTQRVGGAAESQLNKVTHEIPMLSMGDVFSLAELADFNRRQQDNSDVKVDFD
YNLELKIDGLSLSLVYENGRLVQGSTRGNGTIGEDVTENVKTIKSIPQVLPEPLSLEFRG
ECYMPKEAFVKLNERREAEGQPVFANPRNAAAGSLRQLDPKVTAARQLDTFMYYVPDYQA
LGVTTQAQALEKMRALGFAVNPNYRVVHSQAELTAYIEEYTEKRDQLPYGIDGIVEKVND
LATQVALGNTVKVPRWEIAYKFPPEEQATVVRDIEWTVGRTGNVTPTAVMDPVQLAGTTV
SRASLHNPDYLAEKDIRLGDTVLLHKAGDIIPEISRVIIEKRPADSKPYEVPTTCPECGA
DLVHLDDEVALRCVNPMCPAQIKEGLAHFASRNAMNIDGLGPKIIEQLWDKGMVKDVADL
YRLEAAQLLTLPKFGEKSISNLLTAIANSRHNSCERLLFGLGIRHVGAKVAQLLAAEFKS
VDALMAADAATISAVDSIGPIIGDAVATYFQNEQVHQLIAELKEVGVNMDYLAPTTSATE
SAEWAGKRVVLTGKLTKMTRGQAQEWLSARGASVTGSVSKKTDLLIAGEKAGSKLEKAQT
LGIEVWDEDRFDQAMKEEN
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagcaagaagccgtaagtgagctaaccaagcaacaggctcaagcggagttaacg
cctttaagagagcagctcaagaagtggggagcggagtattacgaacaggacaacccgagc
gtggaggattacgtttacgaccgggcttaccaacgcctagtggaaatcgagcaacgcttc
ccggacttggtggtacctgattcaccaacgcaacgggtagggggggccgcggaaagccaa
ctcaacaaggtgacccacgagatcccgatgctttcgatgggggacgtcttctcgctcgca
gaattggcggactttaaccgccgccaacaagacaacagtgacgtcaaagttgattttgac
tacaacctggaacttaagatcgacgggttatcgttatcgttagtctacgaaaatggccgt
ttggtgcagggttcgacccgggggaacgggacgatcggtgaagacgtgaccgaaaacgtt
aagacgattaagtccatcccgcaggtcctgcccgaacccctctcgctagaatttcgtggc
gagtgctatatgcccaaggaggccttcgttaagctcaatgaacgccgtgaagcggaggga
cagccggtctttgccaacccgcgtaacgccgccgccggttccctgcgccagctagatccg
aaggtgacggccgcccgccagttggatacctttatgtactacgtgcccgactaccaagca
ctaggggtgaccacccaggcgcaagcgctcgaaaagatgcgggcgctgggctttgccgtc
aaccccaactaccgggttgttcacagccaagcagaactgaccgcctacattgaggagtac
actgaaaaacgggatcagctcccctacggaattgacgggatcgtcgaaaaggttaacgac
ctagcaacgcaggtggcgctggggaatacggttaaggtgccacgctgggaaattgcctac
aagttcccaccggaggaacaggcgaccgtcgttagagacattgagtggactgtggggcgg
accggtaacgtcacccctaccgccgtaatggatccggtacagctggcggggacgaccgtt
tcccgggcctccttacacaatcccgattaccttgccgaaaaagacattcgcctgggcgat
accgtcttgttacacaaggccggtgatatcatcccggaaatttcccgggtaataattgag
aagcgcccggctgatagtaagccctacgaagtgccgactacctgtccggagtgcggggcc
gacctagtgcacctcgatgacgaagtggcgctgcgctgcgttaacccaatgtgtccggcc
caaattaaggagggcctggcccactttgcctctcgcaacgccatgaacatcgacgggttg
gggcctaagatcattgaacaactctgggataaggggatggttaaagacgttgccgacctt
taccgcctggaagccgcrcaattgttaactttgcctaaatttggcgagaaatcgatcagc
aacctattgacagccattgctaatagtcgtcataattcatgcgaacgccttttgtttggc
ttagggattcggcacgtgggcgccaaggtcgcccagctactagccgccgaatttaagtcg
gtggacgccctgatggcagctgacgccgcaaccatttcggcggttgattcgatcggcccg
atcatcggtgacgcggtggcgacctactttcaaaacgaacaggtccaccagttgattgcc
gaactaaaagaggttggcgtcaacatggactacctggcccccaccaccagcgcaacggaa
agtgccgagtgggccggaaaacgggtggtcctaaccggaaaactaaccaagatgacccgc
ggccaagcccaggagtggctgagtgcccggggcgcttcggtaaccgggagcgtttctaag
aaaacggatctcttaattgccggtgaaaaggccggtagcaaactggaaaaggcgcaaacg
ctgggcatcgaggtctgggatgaagaccgctttgaccaagcgatgaaggaggaaaactag
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