Limnospira fusiformis: HFV01_07975
Help
Entry
HFV01_07975 CDS
T06534
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lfs
Limnospira fusiformis
Pathway
lfs03030
DNA replication
lfs03410
Base excision repair
lfs03420
Nucleotide excision repair
lfs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HFV01_07975 (ligA)
03410 Base excision repair
HFV01_07975 (ligA)
03420 Nucleotide excision repair
HFV01_07975 (ligA)
03430 Mismatch repair
HFV01_07975 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lfs03032
]
HFV01_07975 (ligA)
03400 DNA repair and recombination proteins [BR:
lfs03400
]
HFV01_07975 (ligA)
Enzymes [BR:
lfs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HFV01_07975 (ligA)
DNA replication proteins [BR:
lfs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HFV01_07975 (ligA)
DNA repair and recombination proteins [BR:
lfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HFV01_07975 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HFV01_07975 (ligA)
MMR (mismatch excision repair)
DNA ligase
HFV01_07975 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HFV01_07975 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
Dna2
Motif
Other DBs
NCBI-ProteinID:
QJB25736
LinkDB
All DBs
Position
1632132..1634174
Genome browser
AA seq
680 aa
AA seq
DB search
MNDQTPKTPTPEISQKLEQLRLTVQRASYAYYVLDAPTMEDGVYDRLYRELQELETQYPE
LISPDSPTQRVGEKPATQFESVRHNISLYSLENAFNMAELQAWDEKWRRFLGNWAAEDNN
YICELKIDGSAIALTYHDGILVRGATRGDGVTGEDITQNIKTIRSIPLKLHLDNPPPVVE
VRGEAFLYNRIFAEINQERQKNGEPLFANPRNAAAGTLRQLDSRIVAARHLDFFAYTLHL
DSPNLHDHWDCLELLPKMGFKVNPNRQLCQSLLEVQQYFNTWETQRRELPYMTDGVVVKL
NSLSLQKQLGETRKFPRWAIALKYPAEELPTKIISVTFQVGRTGALTPVAELEPIQLAGT
TVKRATLHNQDRLTELDLHIGDTVIVRKAGEIIPEVVRVLPDLRPTGAKLVTMPTHCPEC
GETVVKTPPEAVTRCINSSCPAIVRGSIIHWCGRRALDINGIGEKLVQQLVETQLVRSVA
DLYHLNMDQLVALERQGQKSAQKILEAIAASKKQPWHRVLYGLGIRYVGEVNAELLAQNF
PSCQSLAAASSAQIEGVYGIGAEIATSVYQWFQNPANISLCDRLEQSGLQLASVPSTALK
STPQAQPFAGKTFVLTGTLPTLTREEAKSIIEKAGGKVTNSVTQKVDYLLLGDKPGSKLA
KAQNLGIAELSELELLEMAK
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgaccaaacaccaaaaaccccaaccccggaaatttcccaaaaacttgaacagttg
aggctaactgtccaacgggctagttatgcctattatgttctggatgctccgactatggag
gatggggtttacgatcgcctatatcgggaactgcaagaactcgaaacccaatacccagaa
ctaatctctcctgatagtcctacccagagagtcggagaaaaacccgctactcagtttgag
tctgtacgccataatatcagtctttatagcctggaaaatgcctttaatatggcagaactc
caggcttgggatgaaaaatggcgacgttttcttggtaactgggcagcggaagataataac
tatatctgtgaactcaaaatagatggttcggcgatcgctctcacctatcacgatggcata
ttagttaggggtgcgactcgtggggatggagtcactggggaagacattacccaaaatatt
aaaactatccgctctattcccctaaaattacatctggataacccgccgcctgtggtggaa
gttcggggggaggctttcctctacaaccgtatttttgcggaaattaaccaggaaagacaa
aaaaacggagagccactatttgctaacccgcgtaatgcagccgccggaactctgcgacaa
cttgactcccgcattgtggctgctcgacacttggattttttcgcctatactctacaccta
gactcccccaatttacatgatcactgggattgtctggagttgctcccaaaaatgggcttt
aaagtcaatcctaatcgccaactgtgtcaatctttgctggaagttcagcagtattttaat
acttgggaaactcagcgccgagaattaccctatatgactgatggggtggtggttaagcta
aattccctcagtctccaaaaacagttgggagaaacgagaaaatttccccgctgggcgatc
gcccttaaatatccggcggaagaattgcccactaagattatatcagttactttccaggtc
ggacgtactggagccttgactccggtggctgaacttgaacccatacagttagctggaaca
actgttaaacgcgctacacttcataatcaagaccgcctgactgaattagacctacatatt
ggcgatacggtaattgtccgtaaggctggggaaattatcccggaagtggtgcgagtattg
ccggatttgcgaccaactggcgctaaactggtgactatgccgactcattgtcctgagtgt
ggggaaactgtggtaaaaactccaccggaggcggtcacccgctgtattaattcctcttgt
ccggctattgtgcgcggttctattattcactggtgcggaagaagggctttagatattaat
ggtattggggaaaagctggttcagcaattggttgagactcaattggtgcgatcggtcgct
gacctttatcatcttaatatggatcagttggttgccttagaacgccagggccaaaaatca
gcccagaaaattctggaggcgatcgccgcttctaaaaaacaaccctggcatcgagtatta
tatggtctaggtattcgctatgtcggagaggttaatgctgagttactcgctcaaaatttc
ccgagttgtcagagtttggcggcggcttcttccgcacaaatagaaggcgtttatggtatc
ggcgcggaaattgctacttctgtttatcagtggttccaaaatcctgctaatatcagttta
tgcgatcgacttgaacaatctggtttacagcttgccagtgtgccgtcaactgcactaaaa
tctactccccaagcgcaacctttcgccggaaaaacctttgtgcttaccggaacattacct
actctcacccgagaggaagctaaatctatcattgagaaagctgggggaaaagtaactaat
tctgttacccaaaaagtcgattatttactattaggagacaagccgggatcgaaattagca
aaagctcaaaatctgggtatcgcagagttatccgaattagagcttttagagatggcaaaa
taa
DBGET
integrated database retrieval system
