Lysinibacillus fusiformis: HR49_03455
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Entry
HR49_03455 CDS
T03655
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lfu
Lysinibacillus fusiformis
Pathway
lfu03030
DNA replication
lfu03410
Base excision repair
lfu03420
Nucleotide excision repair
lfu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HR49_03455 (ligA)
03410 Base excision repair
HR49_03455 (ligA)
03420 Nucleotide excision repair
HR49_03455 (ligA)
03430 Mismatch repair
HR49_03455 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lfu03032
]
HR49_03455 (ligA)
03400 DNA repair and recombination proteins [BR:
lfu03400
]
HR49_03455 (ligA)
Enzymes [BR:
lfu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HR49_03455 (ligA)
DNA replication proteins [BR:
lfu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HR49_03455 (ligA)
DNA repair and recombination proteins [BR:
lfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HR49_03455 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HR49_03455 (ligA)
MMR (mismatch excision repair)
DNA ligase
HR49_03455 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HR49_03455 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
BRCT_2
RNA_pol_A_CTD
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AJK86330
LinkDB
All DBs
Position
702352..704355
Genome browser
AA seq
667 aa
AA seq
DB search
MNEIEQRIAELNKLLHEYGYAYYVLDKPVVADSVYDQLLHELIALEEANPSLIFPDSPTQ
RVGGTVVEGFKKVTHDYPMLSLSNAFNEADLQEFDRKVRQAIGDHFSYVCELKIDGLAIS
LKYENGVFVQGATRGDGVVGEEITANLKTIHAIPLRLKEPITIEVRGEAYMPKKSFEKLN
AQRADNGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEVYGIDGHAEMLDY
LEDLGFPSNKERQRCSTIEEVMAFIEHWTENRPHLAYEIDGIVIKVDRYAQQDELGYTAK
SPRWAIAYKFPAEEVVTTLLDIDLTVGRTGVVTPTAILTPVQVAGTTVQRASLHNEDLIR
EKDIRLGDTVIIRKAGDIIPQVVGVLIEQRPENSVPFEMPQNCPVCDSELIRIEGEVALR
CVNPACFAQIAESIKYFVSRNAMNIDGLGDKVVEQLLRADFIHDVSDLYHLTIEQLVELE
RMGEKSATNLVNAIQASKENSMERLLIGLGIRHVGEKAAKIVSEQFGSMEAVMAATEEQL
VAIYEIGDKMASSLVEYFSNDDARAVIERLAEVGVNMTFKGKKVEVVVGDNPFAGKTIVL
TGKLEQLTRNEAKAKIEELGGTVTGSVSKKTDLVIAGEDAGSKLAKAEQLGIEVWNEENL
IEQLNLI
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaatagaacaacgaatagcggagttaaataaattattacatgaatatggttat
gcctattatgtactagataaaccggtcgttgctgacagtgtttatgatcaattattgcat
gaattgattgccttagaagaggccaatccatcacttatttttcccgattcacctactcag
cgtgttggaggaacagttgtagaaggctttaaaaaggtgacacatgattacccgatgcta
agtctatcaaacgcttttaacgaagcagatttacaagaatttgatcgtaaggttcgacag
gctattggggatcatttctcttatgtatgtgagctgaaaatagatggtcttgccatttcg
ttaaaatatgaaaatggcgtgtttgtccaaggcgcaacaagaggagatggtgttgtaggg
gaagaaattacagccaatttaaagaccattcatgcgataccactccgtttaaaagaaccg
attacaatagaagtacgcggtgaagcgtacatgccaaaaaaatcatttgaaaaattaaat
gcccaacgtgctgacaatggtgaagaattatttgctaatccacgtaatgctgctgcaggc
tctttgaggcagttagaccctaaaattgcagcaagtcgccaactatcgactttcatctat
gccattggtggtgatggtgaggtttatggtatcgacggacatgcagaaatgcttgattat
ttagaggatctaggcttcccttccaataaagagcggcagcgctgctctacaatcgaagaa
gtaatggcctttattgagcattggacagaaaaccgtccacatttagcctatgaaattgat
gggatcgttataaaagtcgaccgctatgctcaacaggatgagctgggctatacggcaaaa
agtccacgctgggccattgcttataaattcccagcagaggaagttgtcacgacattacta
gatattgatttaacagtgggacgtacaggggttgtcacaccaacagctattttaacgcca
gttcaagtagcggggacaacagtgcaacgagcttcattacacaatgaagacctgattcga
gagaaagatatacgcctcggggatacagtcattattcgaaaagctggtgatattattcca
caagtggtcggtgtgctaatcgagcagcgtcctgaaaactctgtgccgtttgagatgccc
caaaattgtccggtatgtgatagcgaattgattcgtattgagggtgaagttgctttacgc
tgtgtaaatcctgcatgctttgctcaaattgcagaaagcattaaatattttgtatctcgt
aatgctatgaatattgatggccttggagataaagtagttgagcagttattacgtgcagac
ttcatacatgatgtttctgatttatatcatttaacaatagagcaattggttgaactagaa
cggatgggcgaaaaatctgccaccaatttagtcaatgcgattcaagcctcgaaggaaaac
tcgatggagcgtttattgattggtctaggaattcgtcatgttggtgaaaaggctgcaaaa
atcgtatcagagcaatttggttcgatggaagctgtcatggcagcaacagaggaacaactt
gtggctatttatgagattggtgataaaatggcatcttcattggttgaatatttctcaaac
gatgacgcacgtgcagtcattgaacgtcttgctgaggtaggcgtgaatatgacctttaaa
ggaaaaaaagtagaagtagtggtaggcgataatccttttgcaggaaaaacaattgtttta
actggtaaacttgagcaattgacacgtaacgaagcaaaggcgaaaatagaagagttaggt
gggactgtcacaggcagtgtcagcaaaaaaacggaccttgttatcgcaggcgaggatgca
ggctctaagctagcaaaggctgagcaattaggtattgaagtttggaatgaagaaaactta
attgaacaacttaacctcatctaa
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