Luteimonas fraxinea: LU699_01045
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Entry
LU699_01045 CDS
T09935
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lfx
Luteimonas fraxinea
Pathway
lfx03030
DNA replication
lfx03410
Base excision repair
lfx03420
Nucleotide excision repair
lfx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lfx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LU699_01045 (ligA)
03410 Base excision repair
LU699_01045 (ligA)
03420 Nucleotide excision repair
LU699_01045 (ligA)
03430 Mismatch repair
LU699_01045 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lfx03032
]
LU699_01045 (ligA)
03400 DNA repair and recombination proteins [BR:
lfx03400
]
LU699_01045 (ligA)
Enzymes [BR:
lfx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LU699_01045 (ligA)
DNA replication proteins [BR:
lfx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LU699_01045 (ligA)
DNA repair and recombination proteins [BR:
lfx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LU699_01045 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LU699_01045 (ligA)
MMR (mismatch excision repair)
DNA ligase
LU699_01045 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LU699_01045 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Bep_C_terminal
DUF4796_N
DUF7501
Motif
Other DBs
NCBI-ProteinID:
UHH10361
LinkDB
All DBs
Position
complement(233074..235578)
Genome browser
AA seq
834 aa
AA seq
DB search
MPKPSPAGRVAELRALIEDANHRYYVLDDPSIPDADYDALLRELEALETAHPELASDDSP
TRTVGARPDGGFPEVTHAIPMLSLANAFETAGVEDDADDRARYAEVADFERRIEQKLDIE
APVFSVEPKLDGLAISLRYEDGVFVQGATRGDGSTGENVTANLRQVRAVPLKLRETATPP
PAVLEVRGEIYMPRKAFEAWNAKALDHNEKLLANPRNGAAGSLRQLDPAVTRRRPLAFFA
YSIGEVRGLELPETHSETLALLRDFGFPVAPEADTATGFDGLIAYFRRIGEARDTLPYDI
DGVVYKLDDYDQQATMGFVSRAPRWALAHKFPAQEQSTVLRAIEVQVGRTGAITPVARLE
PVQVAGVTVTNATLHNEDQIRRLDAREGDTVIVRRAGDVIPEIVRVIEAQRPADTVEWTM
PATCPVCGSELVREEGASAWRCTGGLTCSAQRKEAVRHFASRRAMDIEGLGDKQAEALVE
FGFVHSPADLFSLTVEDLVRMKTALDAVTAADLAQAIADSKGALALDGEGEAVLAQESPV
WKDAAFLRAHLTVETGGKLATKWAENLVAGIDASRSTTLPRFLFALGIPHLGETTAKSLT
QWLGTLDFVRTTPAVLLQALPDIGGEVARSIATFFEQPGNIEVVDALLAAGITFNDETAP
SAALRERLGLAHLLSTLPVDKLGGKSAERLADTYGTLDALLRANASGWTGAGLSSAGADN
LSAFLANADALAALRASDAAMRRLLDAAPAKTVKTSGPLDGKTVVLTGSLEAMTRDEAGE
RLEALGAKIAGSVSKKTSLVVAGEAAGSKLTKAQELGIEIWDEAALLAFLESQA
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagccatctcccgccgggcgcgtcgccgagctgcgcgcgctgatcgaagacgcc
aatcatcgctactacgtgctcgacgatccgtcgatcccggatgccgattacgacgcgctg
ttgcgtgaactcgaagcactggaaactgcgcatcccgaactcgcgagcgacgactcgccg
acccgcaccgtcggcgcgcgacccgatggcggtttcccggaagtcacccacgcgatcccg
atgttgtcgctcgccaacgcgttcgagaccgccggtgtcgaggacgatgccgatgaccgc
gcgcgctacgccgaagtcgccgatttcgagcgtcgtatcgaacagaagctcgacatcgaa
gcgccggtgttctcggtcgaacccaagctcgacggcctcgcgatcagcctgcgctacgag
gatggcgtgttcgtgcagggcgccacgcgtggcgacggcagcaccggcgagaacgtcacc
gcgaacctgcgacaggtgcgcgcggtgccgctgaagctgcgcgagaccgcaacgccgccg
ccggcggtgctggaagtgcgcggcgaaatctacatgccgcgcaaggccttcgaggcctgg
aacgcgaaggcgctcgaccacaacgagaagctgctggccaatccgcgcaacggcgcagcg
ggctccctgcgtcagctcgatcccgcggtcacgcgccggcgtccgctggcattcttcgcg
tattcgatcggcgaggtgcgcggactcgaactgccggaaacgcattccgagacgctcgcg
ctgctgcgtgacttcggctttcccgtcgcgcccgaagccgacaccgcgaccggtttcgac
ggcctgatcgcgtacttccgccgcatcggcgaagcgcgcgacacgctgccctacgacatc
gacggcgtggtctacaagctggacgactacgaccagcaggcgacgatgggttttgtctcg
cgcgcgccgcgctgggcgctggcacacaaatttcccgcgcaggagcagtcgaccgtgctg
cgtgcgatcgaggtgcaggtcggtcgcaccggtgcgatcacgccggtcgcgcggctggag
ccggtgcaggtcgccggtgtcaccgtcaccaacgcaaccctgcacaacgaagaccagatc
cgccgcctggacgcgcgcgaaggcgacacggtgatcgtgcgccgcgccggcgacgtgatt
cccgagatcgtgcgcgtgatcgaagcgcagcgtcccgcagatacggtcgaatggacgatg
ccggcaacatgcccggtctgcggctccgagctcgtgcgcgaggagggtgcgtcggcctgg
cgctgtaccggtggcctgacctgctcggcgcagcgcaaggaagccgtgcgccacttcgcg
tcgcggcgcgcgatggacatcgaaggcctcggcgacaagcaggccgaagcgctggtcgag
ttcggtttcgtgcattcgccggccgatctgttctcgctgacggtcgaggatctggtgcgg
atgaagaccgcgctcgatgcggtgaccgcggcggatctcgcgcaggcgatcgccgacagc
aagggcgcactcgcgctcgacggcgagggcgaagcggtgctggcgcaggagtcgccggtg
tggaaggacgcggcgttcctgcgtgcgcatctgacggtcgagaccggtggcaagctcgcg
acgaagtgggcggagaatctcgtcgccggcatcgacgccagccgcagcaccacgctgccg
cgcttcctgttcgcgctgggcattccgcatctgggcgagacgacggccaagtcgctcacg
cagtggctgggcacgctcgacttcgtgcgtacgacgcccgccgtgctgctgcaggccctg
cccgacatcggcggcgaggtcgcgcgttcgatcgcgacgttcttcgagcagccgggcaac
atcgaggtcgtcgatgcgctgctcgccgcgggcatcaccttcaacgacgaaaccgcaccg
tcggccgcgctgcgcgagcgtctggggctcgcccatctgctgtcgacgctgcctgtcgac
aagctgggcggcaagagcgccgagcgtctcgcggacacctacggcacgctcgatgcgctg
ctgcgtgcgaatgcgagcggctggaccggcgccgggctttcgtcggcgggcgcggacaac
ctgtcggcgttcctggccaatgcggatgcactggctgcgctccgcgcgagcgatgccgcg
atgcggcgcctgctcgatgcggcgccggccaaaacggtgaagaccagcggtccgctcgac
ggcaagaccgtcgtgctgaccggcagtctcgaggcgatgacccgcgacgaggccggcgaa
cgacttgaagcgctgggcgcgaagatcgcgggcagcgtgtcgaagaaaacctcgctggtc
gtggccggtgaagctgccggttcgaagctgacgaaggcgcaggaactcgggatcgagatc
tgggacgaagccgcactgctcgcatttctcgaatcgcaggcgtga
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