Limosilactobacillus gastricus: LG045_02265
Help
Entry
LG045_02265 CDS
T07129
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lgas
Limosilactobacillus gastricus
Pathway
lgas03030
DNA replication
lgas03410
Base excision repair
lgas03420
Nucleotide excision repair
lgas03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lgas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LG045_02265 (ligA)
03410 Base excision repair
LG045_02265 (ligA)
03420 Nucleotide excision repair
LG045_02265 (ligA)
03430 Mismatch repair
LG045_02265 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lgas03032
]
LG045_02265 (ligA)
03400 DNA repair and recombination proteins [BR:
lgas03400
]
LG045_02265 (ligA)
Enzymes [BR:
lgas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LG045_02265 (ligA)
DNA replication proteins [BR:
lgas03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LG045_02265 (ligA)
DNA repair and recombination proteins [BR:
lgas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LG045_02265 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LG045_02265 (ligA)
MMR (mismatch excision repair)
DNA ligase
LG045_02265 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LG045_02265 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
RNA_pol_A_CTD
Nlig-Ia
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QGF40034
LinkDB
All DBs
Position
464248..466287
Genome browser
AA seq
679 aa
AA seq
DB search
MAEVPVSDLSHDQAQVELPTLRAQLIQWGKEYYEQDQPTVEDYVYDRTYQRLVEIEGKFP
DLVSPDSPTQRVGGQTESQLGKVNHAIPMLSMGDVFSPAELFEFNQRQQASTEVDVEAEY
NLELKIDGLSLSLVYENGHLVQGSTRGNGQIGEDVTANVKTIKDIPLELSEPLSMEFRGE
CYMPKAAFAQLNAEREANGEPVFANPRNAAAGSLRQLDPKITAKRQLAVFMYYIPEYQQL
GLQTQTQALEKMAALGFPVNPNYRVVQNDEEIQAYIDEYTAQRDQLPYGIDGIVEKVNDL
DTQVALGNTVKVPRWEIAYKFPPEEEPTVVREIEWTVGRTGNVTPTAVMDPVQLAGTTVS
RASLHNPDYLMAKDIRIGDTVLLHKAGDIIPEISTVVKAKRPADSQPYQIPTTCPVCGST
LVHLTDEVALRCINPMCPAQIKEGLAHFASRNAMNIDGLGPKIIEQLWDHQLIHDVADLY
RLTSEQLLDLPKFGEKSAQNLINSIEQSRHNSVERLIFGLGIRHVGAKAALLLAQRFGSL
DELKVAKAQTIAQVDNLGDTIGQSVETYFANPQVQTLLDELKAAGLNFDYLAPQGQVASA
EWQDRRVVLTGSLTTMTRQEATNWLSQHGATVTGSVSKKTDLLIAGEKAGSKLTKAQSLG
IEIWNETQFAEAMKGATEA
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagttccagtaagcgacttaagtcacgatcaagcacaagtagaattaccaacc
ttacgagctcaattaattcaatggggcaaagaatattatgaacaagatcaaccaactgtt
gaagattatgtttatgatcggacctaccaacgcttggttgaaattgaaggtaaatttcca
gatttagtgagtccagattcgccgacccaacgagtgggcggacaaacggaaagtcaactg
ggaaaagttaatcatgccattcccatgctttcgatgggagatgtgttctcgccagcagaa
ttatttgaatttaatcaacggcaacaagcttctaccgaggtagatgtggaagccgaatat
aacttggaattaaaaatcgacggcctatctttatccttggtttatgaaaatggtcatttg
gtccaaggatccactcgtgggaatgggcaaattggcgaagacgtcaccgctaacgttaag
acgattaaagatattcccttagaattaagtgaacccctgtcgatggaatttcggggtgaa
tgttacatgcccaaagcggcctttgcacaactaaatgcagaacgggaagcaaatggggaa
ccagtctttgctaacccgcggaatgcggcggccggcagtttacgccaactggacccaaag
attacggctaaaaggcaattagcggtctttatgtactacattcctgaataccaacaatta
ggtctgcaaacccaaacccaggccttagaaaaaatggcggccctaggctttccggttaat
cctaattatcgggtggtccagaatgatgaagaaattcaagcttatattgatgaatatact
gcacaacgggatcaattaccctatggaatcgatgggatcgttgaaaaggtcaacgattta
gatacgcaagtggctttaggaaacaccgtgaaggttccgcggtgggaaattgcctataaa
ttcccgcctgaagaagagccaaccgtggtccgcgagattgaatggacggttggccgaacg
ggtaatgttacgccaactgccgttatggatccggtccaattagctggtacgaccgtgagt
cgggcgtccctgcataatcctgactatttgatggcgaaagatattcggatcggtgatacg
gtcttgttacacaaggctggcgatattattccagaaatttcgactgtggtaaaggcgaag
cgaccggctgatagtcagccttatcaaattccgacgacttgtccggtctgtgggtctact
ttggttcatttaacagatgaagtcgcattacgatgcattaatcctatgtgtccagctcaa
attaaggaagggttagcgcattttgcctcgcggaatgccatgaatattgatggtttaggt
cccaaaattattgaacaattgtgggatcatcaactgatccatgatgtagctgatttatat
cgattaactagtgaacagttattagacctaccaaaatttggtgaaaagtctgctcagaac
cttattaattcgattgaacaaagccggcataattcggtagaacgactaatttttggctta
ggcattcgtcatgtaggggcgaaagcagccttattattagcgcaacgctttggttcacta
gacgaattaaaagttgccaaggcccaaacaattgcgcaagttgacaatttaggtgataca
attggacaaagtgtggaaacctattttgccaatccccaggtgcaaactttattagatgaa
ttaaaagccgcggggctgaactttgattatttagcgccccaaggtcaggtggctagtgcg
gaatggcaggatcgccgcgtggtcttaaccggctctttaaccacgatgacccgccaggaa
gcaactaattggttgagtcaacatggtgcgacggtaacggggagcgtttctaaaaaaacg
gacttactaattgcgggcgaaaaagccggtagtaagctgactaaggctcagtcattggga
attgaaatctggaatgaaacacaatttgcggaggccatgaaaggggcaacagaagcatga
DBGET
integrated database retrieval system
