Leminorella grimontii: V8L73_05400
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Entry
V8L73_05400 CDS
T10343
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lgb Leminorella grimontii
Pathway
lgb03030
DNA replication
lgb03410
Base excision repair
lgb03420
Nucleotide excision repair
lgb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lgb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V8L73_05400 (ligA)
03410 Base excision repair
V8L73_05400 (ligA)
03420 Nucleotide excision repair
V8L73_05400 (ligA)
03430 Mismatch repair
V8L73_05400 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lgb03032
]
V8L73_05400 (ligA)
03400 DNA repair and recombination proteins [BR:
lgb03400
]
V8L73_05400 (ligA)
Enzymes [BR:
lgb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
V8L73_05400 (ligA)
DNA replication proteins [BR:
lgb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
V8L73_05400 (ligA)
DNA repair and recombination proteins [BR:
lgb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
V8L73_05400 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V8L73_05400 (ligA)
MMR (mismatch excision repair)
DNA ligase
V8L73_05400 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V8L73_05400 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
RNA_ligase
DZR_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
XBC26941
LinkDB
All DBs
Position
1132381..1134402
Genome browser
AA seq
673 aa
AA seq
DB search
MTSLEQRLNQLRDQLRHHEYLYHVLDAPEVPDAEYDRLMRELREIEAAHPELITDDSPTQ
RVGAAPLSAFNQVTHEVPMLSLDNVFDEASYLAFDKRLHDRLKSDDEITFCCELKLDGLA
VSLLYEDGRLVQAATRGDGTTGENITSNVRTIRAIPLRLQGADIPRRLEVRGEVFMPQAG
FEALNDHARRNHEKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLIDGGVLPESHM
ARLQKFKEWGLPVSDRIRLCKGSEEVLAFYRQVQEDRATLGFDIDGVVIKVDSLELQEAL
GFVARAPRWATAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVSVAGVTVSNATLHN
ADEIARLGLCIGDTVVIRRAGDVIPQVVGVIEAERPSDAKVIVFPTSCPVCGSAIERVEG
EAVARCTGGLVCAAQRKEALKHFVSRRAMDVEGMGDKIIEQLVDKEYVKTPADLYRLSLG
ILTRLERMGPKSAQNLLEALEKSKSTTLARFLFGLGIREVGEATAANLASHFGSLPAIEQ
ADIDALKEVQDVGEVVAKHTYNFFREEHNRSILAELTGPEIGIHWPAPVVIVAEEIDSPF
AGKTVVLTGSLSQMSRDDAKARLITLGAKVSGSVSKKTDMVIAGEAAGSKLAKARELDIP
IIDEAEMLRLLGV
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgctagagcagcgtttaaatcaacttagagaccaactgcgtcatcatgaatat
ctctatcacgttctggatgcgccggaagtgccggatgcagaatacgatcgcctgatgcgc
gaactgcgcgaaattgaggccgctcatcccgaactgattaccgacgattcaccgacccag
cgcgtcggcgccgcgccgctttccgcgttcaatcaggtgacgcacgaagtgcctatgctg
tctctggataacgtatttgatgaggcaagctacttggcgtttgataagcgcctgcacgat
cgcttaaagagcgatgatgagattaccttctgctgtgagctgaagttggacggcctggcg
gtaagcctcctgtatgaagacgggcgtctggtgcaggccgcaacccgaggcgacggtacg
acgggggaaaacatcacctctaacgttcgcactatccgcgcaataccgctgcgtcttcag
ggcgctgatattcctcgtcgtctggaagtgcgcggggaagttttcatgccgcaggcaggc
tttgaggcgcttaacgatcacgctcgccgtaaccatgagaaggtgtttgccaatccgcgc
aacgcggcggcgggctcgctgcgtcagctggatccccgaatcacggccaagaggcctctg
acctttttctgttacggagtagggcttattgacggtggggttctgcctgaaagccatatg
gcgcgtctgcaaaaatttaaagagtgggggctgccggtcagcgaccgcattcgtctgtgc
aaggggagcgaagaagtgctggcgttttatcgtcaggttcaggaagatcgtgcaacgcta
gggtttgatatcgatggcgtcgttatcaaggttgattctctggagctacaggaggcgctg
ggcttcgtcgccagagcgcctcggtgggctaccgcctttaaatttcccgcacaggagcag
atgacggttgtacgagacgttgagtttcaggttggacgcaccggagccattacgcccgtc
gctcgccttgagcccgtcagcgtggccggcgtgacggtcagcaatgctacgctgcataat
gctgacgaaattgctcgcctgggcctgtgtattggcgatacggtcgttatacgccgggcg
ggagacgttattccccaagttgtcggcgttattgaggcggaacgcccgtcagacgcaaag
gtaattgttttcccgacgtcctgcccggtttgcggttcggcgatcgagcgcgtagaaggg
gaggcagtagctcgctgcacgggcgggttggtttgcgcagcccagcgtaaagaggcgcta
aaacacttcgtatcccgtcgggcgatggacgttgaggggatgggcgacaagattatcgaa
cagttggtagacaaagaatatgtgaagacgcccgccgatctgtatcgcctcagtctcggc
attcttactcgccttgagcgaatggggccgaaatctgcgcaaaacctgctggaagcgctg
gaaaagtcgaaaagcactacgctggcgcgtttcctgttcggcctgggcattcgcgaagtc
ggtgaggcgactgcggcaaacctggcgtcccacttcggttctttaccggctattgaacag
gccgatatcgacgcgctaaaagaggttcaggacgttggcgaggtcgtggctaagcatacc
tataacttttttagggaagagcataaccgaagcatcttggccgaattaacggggccagag
atcggcattcactggcccgcgccggtcgtgattgttgccgaagagatagacagtccgttt
gccggtaaaaccgtggtgctgaccggttctctaagccaaatgtcgcgagacgacgccaaa
gctcgcctgataacgttaggagccaaggtgagcggcagcgtgtcgaagaaaaccgatatg
gtgattgccggtgaagcggccggttccaaacttgccaaggcgcgggagttggacattccg
attattgacgaggccgagatgcttcggctgctaggcgtttaa
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