Lachnoanaerobaculum gingivalis: QJR73_02100
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Entry
QJR73_02100 CDS
T09491
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lgg
Lachnoanaerobaculum gingivalis
Pathway
lgg03030
DNA replication
lgg03410
Base excision repair
lgg03420
Nucleotide excision repair
lgg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lgg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QJR73_02100 (ligA)
03410 Base excision repair
QJR73_02100 (ligA)
03420 Nucleotide excision repair
QJR73_02100 (ligA)
03430 Mismatch repair
QJR73_02100 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lgg03032
]
QJR73_02100 (ligA)
03400 DNA repair and recombination proteins [BR:
lgg03400
]
QJR73_02100 (ligA)
Enzymes [BR:
lgg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QJR73_02100 (ligA)
DNA replication proteins [BR:
lgg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QJR73_02100 (ligA)
DNA repair and recombination proteins [BR:
lgg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QJR73_02100 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QJR73_02100 (ligA)
MMR (mismatch excision repair)
DNA ligase
QJR73_02100 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QJR73_02100 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
PTCB-BRCT
BRCT_2
HHH
DNA_ligase_ZBD
HHH_3
Zn_ribbon_Top1
Lar_restr_allev
RUBY_RBDX
Zn_ribbon_8
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WHE87823
LinkDB
All DBs
Position
447169..449121
Genome browser
AA seq
650 aa
AA seq
DB search
MDKKKRIKELVEILNKAAKSYYVDAVEIMPNIEYDKLYDELLELEKETNVVLSNSPTQNV
GYEIAGELPKKAHESPMLSLDKTKSVEDLREWLGDNKALLSWKMDGLTVVLTYRDGELVE
AVTRGNGTIGEVITNNAKNFQNIPLKIEFKGELILRGEAIIKYSDFKRINDAIEDATAKY
KNPRNLCSGSVRQLNPAITKARMVYCNIFNVVKADGVDFENSKAKQFEWAKNEGFDVVEY
KFTDSKSIADDVAEFESKIESNDIPSDGLVLLLDDIALGERLGSTSKFPRNAMAFKWSDE
RQVTKLKYIEWSPSRTGLINPVAVFEPVELEGTTVSRASLHNVSIFEDLMLGVGDEISVY
KANMIIPQVYENLTKSNTEKVPDTCPACGSHASIKQDNESKVLMCTNPDCQIKHIKQYAL
MASRDALNIDGLSESTLEKFLSKGFIKNDSDIFKLDRYKDEIVNMEGFGKRSYEKLMAAL
EEAKHTNVARFLYSLGINGIGSANAKMIAKYFDNDIDKIITAGKDDLLEIEGIGEVLANS
IVDFFKDSKNMENVKSLREVLIFEREESAGSDSFAGKVFVITGSLEHFTNRNELKELIEK
NGGKVSGSVSSKTNFLINNDTASNSSKNKKAKELGVEIISEEDFLKLLEG
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggataagaaaaagagaattaaggaactggttgaaatacttaataaggccgcaaaaagc
tactatgtggatgcggttgagataatgccgaatatagaatatgacaaactctatgatgag
cttttagaattagaaaaagaaacaaatgtggttttatctaattcccctactcagaatgta
ggatatgaaatagccggtgaactcccaaagaaagcccatgaaagtcctatgctttcactg
gataagactaaaagtgtggaagatcttagagaatggcttggtgataataaggcattactt
tcatggaagatggacggactgactgtagtacttacctacagagacggtgagctggttgaa
gctgttacaagaggtaacggaactataggagaggttattacaaataatgccaaaaacttc
caaaatatacctctaaagatagagtttaagggtgaattgatacttagaggtgaggcaatt
ataaaatattccgactttaagagaattaatgatgctatagaagatgcaactgccaagtat
aagaatccgagaaatctttgctcaggctctgtaagacagcttaatcctgcaattacaaag
gcaaggatggtatattgcaatattttcaatgtggtaaaagccgacggtgtagactttgaa
aactcaaaggcaaagcagtttgaatgggctaaaaatgaaggctttgatgtagtggaatat
aaatttacagacagcaaaagtattgcagatgatgtagccgagtttgagtcaaagatagag
agcaatgatattccttcagacggtcttgtacttttacttgatgatatcgcacttggagaa
agacttggaagcacttcaaaattcccgaggaatgctatggcatttaaatggagtgatgaa
agacaggtaacaaaacttaaatatatagagtggagtccgtcaagaacaggacttataaat
cctgtggctgtatttgagcctgtagaacttgagggaactaccgtttcaagagccagcctt
cacaatgtaagtatatttgaagatttgatgcttggagtcggtgatgaaatttctgtatat
aaagccaatatgataattccgcaggtatatgaaaatctcacaaaatcaaatactgaaaaa
gttccggatacctgtccggcatgtggaagccatgcaagtataaagcaggacaatgagtcc
aaggtacttatgtgtactaatcctgattgtcagataaagcatataaagcagtatgctctt
atggcatccagagatgcgttaaatattgacggactttcagagtccacattggagaaattt
ctctcaaagggctttataaaaaatgacagtgatatatttaagctggacagatataaagat
gagattgtaaatatggagggctttggaaaaagaagctatgaaaagcttatggcggcactt
gaagaagcaaaacatacaaatgtggcaagatttttatattcacttgggataaacggaata
ggaagcgccaatgccaagatgattgcaaagtattttgacaatgatattgacaaaattatt
actgccggaaaagatgatctgcttgaaatagagggaataggtgaagtgctggcaaattcc
atagttgatttttttaaggattctaagaatatggaaaatgtaaagagccttagagaagtc
cttatatttgaaagggaagagtctgcgggaagtgattcatttgccggaaaagtatttgtt
atcacaggctcgcttgaacattttacaaacagaaatgaattgaaagaacttatagaaaag
aatggcggaaaggtatcgggaagtgtatcaagtaagacaaacttcttgataaataatgat
accgcatcaaattcttctaaaaataaaaaggctaaagaacttggagttgagataatctct
gaagaggacttcttaaaacttttagaaggataa
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