Lactobacillus gallinarum: AO203_05365
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Entry
AO203_05365 CDS
T04115
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lgl
Lactobacillus gallinarum
Pathway
lgl03030
DNA replication
lgl03410
Base excision repair
lgl03420
Nucleotide excision repair
lgl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lgl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AO203_05365
03410 Base excision repair
AO203_05365
03420 Nucleotide excision repair
AO203_05365
03430 Mismatch repair
AO203_05365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lgl03032
]
AO203_05365
03400 DNA repair and recombination proteins [BR:
lgl03400
]
AO203_05365
Enzymes [BR:
lgl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AO203_05365
DNA replication proteins [BR:
lgl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AO203_05365
DNA repair and recombination proteins [BR:
lgl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AO203_05365
NER (nucleotide excision repair)
GGR (global genome repair) factors
AO203_05365
MMR (mismatch excision repair)
DNA ligase
AO203_05365
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AO203_05365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
RNA_pol_A_CTD
bCoV_SUD_C
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ALJ23348
LinkDB
All DBs
Position
1047486..1049492
Genome browser
AA seq
668 aa
AA seq
DB search
MAKITLDEAKKEAASLRTQLDEWADAYYSKDAPEVEDNVYDQSYNRLLELEKAFPEIVTP
DSITQRVGGEIDSDFTKVNHPIPMLSMGDVFSKDELKEFDQRMQKLVGHPVEYNVELKID
GLSLSLEYQDGKLVRASTRGNGYVGEDVTANARYIADIPQILPEPLTTEVRGECYMGKEA
FAKLNQEREDEGLSVFANPRNAAAGSLRQLDPEATKKRQLSTFIYTWVNPPREITSQHQA
IERMHELGFHTNETGRKLANLDEVFDFIDEYTAKRNSLTYGIDGIVLKVDDLSLEQQLGN
TVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVARASLHNPD
YLNEKGVRIGDTVKLHKAGDIIPEVSEVVLSKRPADSVPYEIPTTCPSCGQKLVHLEDEV
ALRCINPSCPAQVEEGITHFASRPAMNIAGLGPKIVKQLIAKDLVHNVADLYHLTEDDLA
QLDHFKEKSINNLLTAIDNSKKNSVELLITGLGIDHVGAKAARLIAQKFKNLEKIMSLGV
QDIASIDTIGMTIAESMTTYFAQPEAQKLIEELRESGLNMDYLGADEPEEAPDNPFKDKT
VVLTGKLEHYTRSEFTKRLQALGAKVTGSVSHKTDYVIYGKDAGSKYNKAEQLGVPLLTE
EEAIAQIE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggctaagattactcttgatgaagctaaaaaagaagcagcttctcttagaacccagcta
gatgaatgggccgatgcgtattattcaaaagatgcgcctgaagttgaagataatgtttat
gatcaaagttataatcgattacttgaactagaaaaagctttccctgaaattgttacgcct
gattcaattactcagcgtgtaggtggagaaatcgatagtgattttacaaaggttaaccac
ccaattcctatgctttcaatgggggatgtcttttcaaaagacgaactcaaggaatttgac
caaagaatgcaaaagttggttggtcatcctgttgaatataatgtcgagttaaagatcgat
ggtttatctttgtctcttgaatatcaagatggcaaattggttcgcgcttcaactcgaggc
aatggttatgttggtgaagacgtaacggctaatgcgcgttacattgcggatattccccaa
attttgccggagcctttgactaccgaagttcgcggtgaatgttacatgggaaaagaagct
tttgccaagttgaatcaagagcgtgaagatgaaggtttgagcgtgtttgctaatccacgt
aacgctgctgccggttcacttcgtcagcttgatcctgaggctactaaaaagcggcaactg
agtacctttatttatacatgggttaatccaccacgcgagattaccagtcagcaccaagca
attgagcgcatgcatgaattgggttttcatactaatgaaactggtcgtaaattggctaat
cttgatgaagtatttgattttatcgacgaatacacggctaagcgtaatagcttaacttat
ggcattgatggtattgttttaaaagttgatgatttaagccttgaacagcaattagggaac
accgtgaaggtgccacgctgggaaattgcttataagtttccaccagaagagcaagaaaca
attgtgcgtgatatcgtttggacggtaggtcgtaccggtgttgtaacacctacggcggtg
atggatcctgttcaattagcagggacaacagttgccagagcttcattacacaatccagat
tacttaaatgaaaaaggcgttagaatcggagacaccgttaagcttcataaagctggcgat
attattcctgaagtttctgaagtagttttatcaaagagacctgcagattctgttccttat
gagattcctactacttgcccatcctgtggacaaaaattagttcacttagaagatgaagta
gccttacgctgcattaatccatcatgtccagctcaagttgaagaaggaattacccacttt
gcttctcgtcctgcgatgaatattgcgggcttaggtccaaaaattgttaaacaattaatt
gctaaggatttagtccataatgttgctgatctataccatttaacagaagatgatttagct
cagcttgatcactttaaagaaaagtctattaacaatttgttaactgcaattgataattcg
aaaaaaaattctgttgaattattgattactggcttaggaattgaccatgttggagctaaa
gcagctcgtttaattgcacaaaagtttaaaaatctggaaaagattatgtccttaggggtg
caagatattgcttcaatcgatacaataggcatgacgattgcagaatcaatgacaacatat
tttgctcaacccgaagcacaaaaattaattgaagaattaagagaaagtggtcttaatatg
gattacttgggtgcagatgaaccagaagaagcaccggataatccgtttaaagataaaact
gttgttttaaccggtaagttagagcattatacaagaagcgaatttactaagagattgcaa
gctttaggtgctaaggttacaggatctgtatcacataaaactgattacgtaatttatggc
aaagatgctggatctaagtataataaggctgagcaattaggggtaccacttctgactgaa
gaagaggcaatcgcacagattgaataa
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