Latilactobacillus graminis: LG542_02285
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Entry
LG542_02285 CDS
T06857
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lgm
Latilactobacillus graminis
Pathway
lgm03030
DNA replication
lgm03410
Base excision repair
lgm03420
Nucleotide excision repair
lgm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lgm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LG542_02285 (ligA)
03410 Base excision repair
LG542_02285 (ligA)
03420 Nucleotide excision repair
LG542_02285 (ligA)
03430 Mismatch repair
LG542_02285 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lgm03032
]
LG542_02285 (ligA)
03400 DNA repair and recombination proteins [BR:
lgm03400
]
LG542_02285 (ligA)
Enzymes [BR:
lgm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LG542_02285 (ligA)
DNA replication proteins [BR:
lgm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LG542_02285 (ligA)
DNA repair and recombination proteins [BR:
lgm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LG542_02285 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LG542_02285 (ligA)
MMR (mismatch excision repair)
DNA ligase
LG542_02285 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LG542_02285 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
Ribosomal_S13
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QFP79127
LinkDB
All DBs
Position
462300..464330
Genome browser
AA seq
676 aa
AA seq
DB search
MGLAKSIDQYTQIEAAEAAQKLRQTLAKYSEAYYTKDAPVVEDYVYDDLYHDLEQLEAAF
PDIVTHDSPTQKVGDQVLPGFKKVIHAIPMLSMGDVFSEAELATFDNRLQKNIGQPIEYN
VELKIDGLAIDLIYEKGRFVRGATRGNGTIGEDITQNLKTIKAIPQKLTKPVSIEVRGEC
YMPKAAFAALNTKREAQGQPPFANPRNAAAGSLRQLDAQVAADRNLSAFMYTIVTFDDVQ
VTTQHEALEVLAELGFNVNPTAEVCQDMMAVQAFIARYQAMRDALEYGIDGVVLKVNDLA
LQRQLGNTVKVPRWEIAYKFPPEEAATIVRDIEWTIGRTGVVTPTAVMDPVQLAGTTVAR
ASLHNADMLQDKDVRLLDTVLLHKAGDIIPEISQVVLAKRPNDSQPAIIPTVCPSCGHEL
VHLDEEVALRCINPMCPAQIKEQLTHFASRNAMNIDGLGPRIIGQLLDQGLVHDVADLYR
LTATQLAQLDKFKEKSINNLLNAIETSRQNSLERLLFGLGVRHVGAKAARLLAAHFETMA
ALMASDQEAIMAVDTIGATIADSLVTYFADAQVQTLIHELAEVQVNLTYTGVTQAQAQNS
DSYFNGKTVVLTGKLTQYTRSELKQRLEDNGAKVTGSVSKKTDILIAGEDAGSKLVKAQA
LAIPIINEAALESYWM
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgggattagcgaaatcaattgatcaatatacacaaattgaagcggcagaagcggcccaa
aaactccggcaaacattagccaaatatagtgaggcatattacacaaaagacgcaccggta
gtggaagattacgtgtatgatgacctgtatcatgatttagaacaactagaagccgctttc
ccagacatcgtcacccatgattcaccaacgcagaaggttggcgatcaagtcttaccagga
tttaaaaaagtaatacatgctataccgatgttatcgatgggagatgtcttttcagaagca
gaactcgctacttttgataatcggttacaaaaaaatattggtcagcccatcgaatataat
gttgaattaaaaattgacggactggcgattgatttaatttatgaaaaaggtcgttttgtt
cggggagcaacccgcggcaatgggacaatcggggaggatatcacccaaaacctaaaaacg
attaaagcaattccacaaaaattaactaagccggtttcaatcgaagtccgcggcgaatgt
tacatgcccaaagccgcttttgcggctttaaatactaaacgtgaagcacagggacaacca
ccatttgcgaatccacggaatgctgcggccgggagtttacggcaattggatgctcaagtg
gctgctgatcggaatttgagtgcctttatgtatacgattgtcacgtttgatgatgtgcag
gtgacaacgcaacatgaagcgttagaagtgctcgcagaacttggatttaacgtcaatccg
acagctgaagtttgccaagatatgatggcagtccaagcctttattgcgcgttatcaagca
atgcgagacgcattggaatacggaatcgatggggttgtcttaaaagtgaatgacctagct
ttacaacgccaactaggcaatacggtgaaagtgccacgttgggaaatcgcttataaattt
ccacctgaagaggctgcgacaattgtccgtgatatcgagtggacaattggacgcacaggg
gttgtgaccccgactgccgtgatggatcccgttcaattggctgggacgacagttgcgcgt
gcttcattgcacaatgccgatatgctacaggataaagatgttcgcttattggacacggtc
ttgttgcataaggccggggatatcattccggaaatctcccaagtcgtattagctaaacga
cctaatgacagccaaccggccataattccaactgtctgtccatcttgtggccatgaatta
gtccatttagatgaagaagttgctttgcggtgtattaatccgatgtgcccagcacaaatt
aaggaacaactaacgcattttgcatcacggaatgcgatgaatatcgatggcttaggaccg
cgcattattggccaattgctggatcaaggcttggtgcatgatgttgctgatttatatcga
ctgacagccacgcaattagcacagttagataagtttaaagaaaaatcgattaataattta
ttaaatgccattgaaaccagtcggcaaaattcgctagaaaggttattatttggattaggg
gttcgccatgtaggcgccaaagcagcccgattattggcggcgcattttgagaccatggcg
gctttgatggctagtgaccaagaagcgattatggcggtagatacaattggtgcgacgatt
gcggatagtttagtgacttattttgcagatgcacaagtccaaacgctgatccatgaattg
gctgaagttcaggtcaatttaacttatactggggtgacccaagcccaagcgcaaaatagt
gatagttattttaatggtaagaccgttgtactgaccggtaaattaacgcaatatacacgc
agcgaactaaaacaacgccttgaagataacggagcaaaggtaacgggttcagtatctaaa
aagacggatattttgattgcaggcgaagatgctgggagtaaattagttaaagcccaagca
ttagcaattccaattattaatgaagcggctttagaaagttattggatgtag
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