Companilactobacillus ginsenosidimutans: ABM34_11450
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Entry
ABM34_11450 CDS
T03990
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lgn
Companilactobacillus ginsenosidimutans
Pathway
lgn03030
DNA replication
lgn03410
Base excision repair
lgn03420
Nucleotide excision repair
lgn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lgn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABM34_11450 (ligA)
03410 Base excision repair
ABM34_11450 (ligA)
03420 Nucleotide excision repair
ABM34_11450 (ligA)
03430 Mismatch repair
ABM34_11450 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lgn03032
]
ABM34_11450 (ligA)
03400 DNA repair and recombination proteins [BR:
lgn03400
]
ABM34_11450 (ligA)
Enzymes [BR:
lgn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABM34_11450 (ligA)
DNA replication proteins [BR:
lgn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABM34_11450 (ligA)
DNA repair and recombination proteins [BR:
lgn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABM34_11450 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABM34_11450 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABM34_11450 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABM34_11450 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AKP68088
UniProt:
A0A0H4QMY5
LinkDB
All DBs
Position
2298320..2300344
Genome browser
AA seq
674 aa
AA seq
DB search
MADENITKQAANDELAQLRETLNEYRDAYYTKDAPLVEDSEYDKQYNRLLDLEQQFPDLV
TADSPSQLVGDSVNPEFNKVTHEIPMLSMGDVFSEDELADWSNRIEKNVGEEVDYNVELK
IDGLAISLVYENGILVQGSTRGNGTIGENVTENLKTIESIPQKLPRPLSFEVRGECFMDK
HEFLRLNNEREANGEQVFANPRNAAAGSLRQLNPEVTAHRKLDTFMYTIVTFDDLNVETQ
HEALQTMEELGFHVNPTAKVTTGLAGVKDYIEHYGELRDGLDYGIDGVVLKVNDLATQRS
LGNTVKVPRWEIAYKFPPEQAETIVRDIEWTIGRTGVLTPTAVMDPVSLAGTTVARATLH
NIDMIKSKDIRVGDTVLLHKAGDIIPEVSQVVLKKRPADSVPAEIPTHCPYCDSELIRLE
DEVALRCINPKCPAQVKEQLTHFASRNAMNIDGLGPKIIEQLYTKKLIEDVADLFKLTAD
DLSELDGFKDKSINNLLTAIDNSKANSVERLLFGLGIRHVGAKAARILSENFGDLDSLMS
ASKEEILEVNTMGEIIADSIITYFDNNDVQKLINELKSVGVNTKFIGSSNNNETNEHFTD
KIIVITGTLTKYKRSELTSLLEDMGSKVTGSVTKKTDILIAGEKAGSKLTKAQQLGTEII
DENTLSDFLNDTEE
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgaaaacattacaaaacaagctgccaacgatgagcttgcacaattgcgtgaa
acgctaaatgaataccgtgatgcctattacaccaaagatgcgccattagttgaagatagt
gagtatgacaagcaatataatcgattgctggatttggaacagcaatttccagaccttgta
actgcagattcaccatcacaattagttggtgattcagtcaatcctgaattcaataaagta
acacatgaaattcccatgctctcaatgggggatgtcttttccgaagatgaattagccgat
tggagtaatcgaatcgagaaaaatgtcggtgaagaagttgattacaacgtcgaattaaaa
attgacggcctagccatttcgttagtatatgaaaatggaattttagttcaaggatcaaca
cgtggaaatggaacaatcggtgaaaacgtaactgagaaccttaaaaccatcgaatctatt
ccacaaaaattaccacgtccgttaagctttgaggtccgtggcgaatgcttcatggataaa
catgaatttttacgtttgaacaacgagcgtgaagctaatggtgaacaagtatttgcaaat
ccaagaaacgctgccgccggaagtttgcgtcagttgaatccagaagttactgcccacaga
aagcttgatacattcatgtacactatcgttacttttgatgatttgaatgttgagacccag
catgaggctctgcaaacaatggaagaacttggattccacgttaatccaactgctaaagtt
acaaccggacttgctggtgtaaaagattacattgaacattacggagaattgcgtgatgga
ctagattatggaattgatggagttgttttgaaagttaatgatttagcaactcaaagaagt
ttaggaaataccgttaaagttcctcgttgggaaatcgcctataagttcccacctgaacaa
gctgaaactattgttcgtgatattgaatggacaattggtagaacaggagttttaactcca
actgctgtgatggatccagtaagtttagctggaacaacagtagctcgtgctacactacat
aacattgatatgattaaatcaaaagatattcgagttggagatactgttttgctgcacaaa
gcaggggatattattcctgaagtttctcaagtagttttgaagaaacgtcctgctgattct
gtaccagctgaaattccaacccactgtccatattgtgattcagaacttattagacttgaa
gacgaagtggcacttcgttgtatcaatcccaagtgtcccgctcaagttaaagaacaacta
actcattttgcctcaagaaatgcgatgaatatcgatggcttaggaccaaagattatcgag
caattgtatacgaaaaaattgatcgaagatgttgctgatttattcaagttaacagctgat
gatctttctgaattagatggtttcaaagacaaatcgattaataatctattaacagcaatt
gataactcaaaagctaattcagttgagagattattatttggtctcggaattagacacgtc
ggtgctaaggctgccagaatcctcagtgaaaattttggtgacttagacagtttgatgtct
gcttcgaaagaagaaattcttgaagtgaacacaatgggagaaataattgccgatagtatt
attacttattttgataataatgatgttcaaaagttaattaatgaattaaaatcagtagga
gttaacacgaaatttattggtagttccaataataatgaaacaaatgaacactttactgat
aaaataattgttataactggtactctgacgaaatacaaacgttcagaattaactagtctc
ttggaagatatggggtcaaaagtaactggctctgtaactaaaaagactgatattttaatt
gccggtgaaaaagctggtagtaaactgacaaaggctcaacagttaggtactgaaataatt
gatgaaaacaccttgtcagattttctgaatgatacagaggaataa
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