Pseudoleptotrichia goodfellowii: JCM16774_1505
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Entry
JCM16774_1505 CDS
T06508
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lgo
Pseudoleptotrichia goodfellowii
Pathway
lgo03030
DNA replication
lgo03410
Base excision repair
lgo03420
Nucleotide excision repair
lgo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JCM16774_1505
03410 Base excision repair
JCM16774_1505
03420 Nucleotide excision repair
JCM16774_1505
03430 Mismatch repair
JCM16774_1505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lgo03032
]
JCM16774_1505
03400 DNA repair and recombination proteins [BR:
lgo03400
]
JCM16774_1505
Enzymes [BR:
lgo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JCM16774_1505
DNA replication proteins [BR:
lgo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JCM16774_1505
DNA repair and recombination proteins [BR:
lgo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JCM16774_1505
NER (nucleotide excision repair)
GGR (global genome repair) factors
JCM16774_1505
MMR (mismatch excision repair)
DNA ligase
JCM16774_1505
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JCM16774_1505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
UPF0758_N
RNA_pol_A_CTD
zf-NADH-PPase
Radical_SAM
Motif
Other DBs
NCBI-ProteinID:
BBM36561
UniProt:
A0A510JDL3
LinkDB
All DBs
Position
complement(1480086..1482179)
Genome browser
AA seq
697 aa
AA seq
DB search
MKLFDNKIKSETVDFEEYKRLRKDIEKYNHYYYNEDKPLISDKEYDDLIKKLQKIEEENS
KFKNDYTLLSKDNSDISDIEENPEITPTEKIGGTASEKFSKVIHSVPMLSLSNTYNISEI
EDFDQRARKITGLDKKLEYILELKLDGLSISLIYEKGMFKQAITRGDGQIGEDVTENVRE
ISSVPKKLKEPIDVEVRGEIVLPVSNFNKVNEIREEAGEDVFANPRNAAAGTIRQLDSSI
VKDRGLDCYLYYLVNPERYEIKTHLESIEFIKKLGFKTTDIFEKYTDFKELEKSIEKWHD
EREKLDYETDGLVIKVNDFSYYNELGYTTKSPRWAIAYKFPAEQVKTKLLDVTFQVGRTG
VITPVAELEPVTLSGSVVKRASLHNFDEIERKEIKIGDNVIIEKAAEIIPQVVNVVFEDR
TGKEREIEKPTNCPVCGSELVKEEGQVALKCLNPVCPEKVKREIEYFVSRDAMNISGLGE
KIVEKFIELGKIKTVVDIYSLKDYREELENLEKMGKKSVDNLINNIEESKNRGFNKVLYS
LGIPFVGKFTANLLVKNFVNIEKLKNSEIEELLQIKGIGEKVAISVHNYLNNEDNWKKIN
DLKETGLNFSSEDVEEIEIEDNPVKGKNFLATGKLEKYKREEIKEIILSKGGNYLSGVSK
NLDFLIVGEKAGSKLEKAEKLGVRVLDEEEFEREFLN
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
gtgaaactgtttgataacaaaataaagtctgaaactgttgattttgaagaatataaaaga
ttaagaaaagatatagaaaaatataatcactattactataatgaggacaaacctttaatt
tccgataaggaatatgatgatttaattaagaaattacaaaaaatagaagaagaaaactct
aaatttaaaaatgactatacacttctttcaaaggataattcagatatttctgatatagaa
gaaaatcctgaaataacacctacagaaaaaatcggaggaacagcaagtgaaaagttttcc
aaagtgattcacagtgtgcctatgttaagtttgtcaaacacttataatatttccgagata
gaagattttgatcagagagcgagaaaaataacaggtcttgataaaaaattggaatatata
ctggaactgaaactggacggtctaagtataagtctgatatatgaaaaggggatgtttaag
caggcgataacaagaggcgacggacaaataggtgaagatgttactgaaaatgtaagagaa
atatcgtcagttcctaaaaaactgaaagagccgatagatgtagaagtgagaggagaaata
gttcttcctgtttccaattttaataaagtaaacgaaataagggaagaagcaggagaagat
gtatttgccaacccgagaaatgcagctgcaggaactataagacagctcgacagcagtata
gtcaaagacagaggacttgactgctatttatattatttggtaaatcccgaaagatacgaa
ataaaaactcatcttgaaagcatagaatttattaaaaagcttggatttaaaactacagac
atatttgaaaaatatactgattttaaagagttggaaaaatctatagaaaaatggcatgac
gaacgggaaaaactggattatgaaactgacggtcttgtaataaaagtaaacgatttttct
tattataacgaactgggctatactacaaaaagtccgagatgggctattgcttataaattt
ccggcagaacaggtaaaaacaaagttgctcgatgttacttttcaggtaggaagaacaggt
gtaattactcccgttgctgagcttgagcctgtaactttatcgggatcggtagtaaaaaga
gcgagccttcataactttgatgaaatagaaagaaaagaaataaaaataggagataatgta
ataatcgaaaaagctgctgaaataattcctcaagttgtaaatgtagtttttgaagacaga
acaggaaaagaacgggaaatagaaaaaccgacaaactgccctgtgtgcggaagtgaactt
gtaaaagaagaaggacaggtagcattaaagtgcctgaatcctgtttgtcctgaaaaagta
aaaagagaaatcgaatattttgtatcaagagatgctatgaatatttcaggtctaggagaa
aaaatagtcgaaaagtttattgagttgggaaaaataaaaacggtagtggatatttattct
ttgaaagattatcgtgaagaacttgaaaatcttgaaaaaatgggcaaaaaaagtgtcgac
aatcttataaataacatcgaagaaagtaaaaacagaggatttaacaaagttctttattct
ttaggaattccttttgtaggaaaatttactgcgaatttattagttaaaaattttgtaaac
atagaaaaattaaaaaactccgaaattgaagaactgctccaaataaaggggataggagaa
aaagtagcaatttcggtacataattatttgaataatgaagataactggaaaaaaataaat
gatttaaaagagacgggattgaatttttcttcagaagatgttgaagaaattgaaatagaa
gataatcctgtcaaggggaaaaactttttggctacgggaaaacttgaaaagtataaaaga
gaagaaattaaagaaattattttatccaaaggaggaaattatttatcgggagtttctaaa
aatcttgattttcttattgtcggagaaaaagcaggaagtaagcttgaaaaggcagaaaaa
ttaggggtaagagtgttggatgaagaagagtttgaaagagagtttctaaactga
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