Lactococcus garvieae ATCC 49156: LCGT_0299
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Entry
LCGT_0299 CDS
T01618
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lgr
Lactococcus garvieae ATCC 49156
Pathway
lgr03030
DNA replication
lgr03410
Base excision repair
lgr03420
Nucleotide excision repair
lgr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lgr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LCGT_0299
03410 Base excision repair
LCGT_0299
03420 Nucleotide excision repair
LCGT_0299
03430 Mismatch repair
LCGT_0299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lgr03032
]
LCGT_0299
03400 DNA repair and recombination proteins [BR:
lgr03400
]
LCGT_0299
Enzymes [BR:
lgr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LCGT_0299
DNA replication proteins [BR:
lgr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LCGT_0299
DNA repair and recombination proteins [BR:
lgr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LCGT_0299
NER (nucleotide excision repair)
GGR (global genome repair) factors
LCGT_0299
MMR (mismatch excision repair)
DNA ligase
LCGT_0299
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LCGT_0299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
RNA_lig_T4_1
UPF0758_N
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BAK57812
LinkDB
All DBs
Position
305574..307541
Genome browser
AA seq
655 aa
AA seq
DB search
MNIESKIKDLTELLNKYAHEYYTLDMPSVEDAEYDRLYRELETLEHDNPHLVRADSPTHR
TGDVVLSGFEKYTHEYNLYSLADAFSREELEDFDERVRKVIPKPEYICELKIDGLSLSLK
YTAGQLVVAATRGDGSVGENITENVKRIKDVPLVLKEPIDIVVRGEAYLPRKNFVKLNKE
RELEGKPSFANPRNAAAGTLRQLDTKEVTRRGLATFLYQEASPATNDTQEEVLECLEKLG
LVVNKERVFARNIDEVWAFIERVAALRDDLDYDIDGVVIKVNNLAEQEELGFTVKAPRWA
IAYKFPAELAETEILSVDWTVGRTGVVTPTANMVPVTLAQTTVSRATLHNVDYIKEKDIR
LKDKVMIYKAGDIIPAVQRVLFEKRPADSVEMEIPQYCPECSTELLHFEDEVALRCINPL
CPAQNREKLIHFASRGAMNISGLGQSIVTQLFKNDLIKDVADIYKLQFDELVALDKIQEK
SATKLLNAIQASKENSAEKLLFGLGIRHVGSKAAKLLMERFGNLRALSQASLEEIAEIPS
LGSVIAKAVTTYFATEGAQVLLQELAEAGVNFDYLGLKPKTDSVLSGKTVVLTGKLTAMT
RTEAKEKLEALGANVSGSVSKKTDLVIAGADAGSKLAKAQDLGIEVWSEEELLNL
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcgagtcaaagatcaaagatttaacggagctattaaataagtatgctcacgag
tactataccttggatatgccctcggttgaagatgcggagtatgatcgcctttatcgtgag
ttagaaaccctagaacacgataacccacatttggtacgggctgattcgccgacccatcgt
acaggcgatgtcgtactctcaggatttgaaaaatatacccatgaatacaatctctacagt
ctagcagatgctttttcgcgtgaagagctggaagatttcgatgaacgtgtacgtaaagtc
attccaaagcctgaatacatttgtgagttaaaaattgacggcctctcactttctctgaaa
tacacagctggtcaacttgtcgtcgctgcgactcgtggagatgggagtgtaggggaaaac
attacagaaaatgttaaacgaatcaaagatgtccctctggtattaaaagaacctattgat
attgtggtgcgtggtgaagcttatttgccacgtaaaaatttcgtcaaactcaataaggaa
cgtgaacttgaaggtaaaccttcctttgccaacccccgtaatgcagcagccggcacttta
cgacagctggatacgaaagaggtgaccaggcgtggtttggcaaccttcctttatcaagaa
gcgagtcctgcgacaaatgatactcaagaagaagttttggagtgcttagaaaagctagga
cttgtcgtcaataaagaacgtgtttttgcacgaaatattgatgaagtttgggcctttatt
gagcgcgtggccgctcttcgggatgacttggactatgatattgatggtgtggtcatcaaa
gttaataatctggcagaacaagaggaactaggctttacagtcaaggcaccccggtgggca
atcgcttataaatttccagccgaactggcagaaacggaaatcctctctgtggattggaca
gtgggacgtacaggggttgttacaccaacagcaaatatggttcctgtgaccttagcgcag
actacagtatcacgcgctactttgcataatgttgattacattaaggagaaggatatccgt
cttaaagacaaagtcatgatctataaggcaggggatattattccagcagttcaacgtgtt
ttgtttgagaaacgtccagcagattctgtagaaatggaaatccctcaatattgtccggaa
tgttcaactgagcttttgcattttgaagatgaagtcgctttacgttgtatcaacccgctt
tgtccagcacaaaatcgtgaaaaactcattcactttgccagtcgtggtgcaatgaatatt
tctggtttaggtcaatcaatagtgacgcaacttttcaaaaatgacttaatcaaagatgtg
gcagatatctataagctgcagtttgatgaattagtggcccttgataaaattcaagaaaag
tcggcaaccaagctattaaatgcaattcaagcttcaaaagaaaattccgctgaaaaactc
ctttttggtttgggcattcgccatgtcggatctaaagctgccaagttattaatggagcgt
tttggtaatcttcgtgccttgtcgcaagcaagcttagaagaaattgctgaaattccaagc
ctgggctcagttattgccaaagctgtaaccacttattttgcaacagagggtgcacaagtt
ttgcttcaagaattggcagaagcaggagtcaacttcgactatcttggccttaagccgaag
acagacagtgtgttatcagggaaaactgttgttttaacggggaaattaacagccatgaca
cgaacagaggcaaaagaaaaactggaagctttaggcgcaaatgtctcaggttcagtttct
aaaaagacagatttagttatagctggagcagatgctgggtcaaaactggctaaagcacag
gatttaggtatagaagtttggtcagaagaggagttgctgaatttatga
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