Lysobacter gummosus: LG3211_2751
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Entry
LG3211_2751 CDS
T04163
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lgu
Lysobacter gummosus
Pathway
lgu03030
DNA replication
lgu03410
Base excision repair
lgu03420
Nucleotide excision repair
lgu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lgu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LG3211_2751 (ligA)
03410 Base excision repair
LG3211_2751 (ligA)
03420 Nucleotide excision repair
LG3211_2751 (ligA)
03430 Mismatch repair
LG3211_2751 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lgu03032
]
LG3211_2751 (ligA)
03400 DNA repair and recombination proteins [BR:
lgu03400
]
LG3211_2751 (ligA)
Enzymes [BR:
lgu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LG3211_2751 (ligA)
DNA replication proteins [BR:
lgu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LG3211_2751 (ligA)
DNA repair and recombination proteins [BR:
lgu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LG3211_2751 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LG3211_2751 (ligA)
MMR (mismatch excision repair)
DNA ligase
LG3211_2751 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LG3211_2751 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
VMAP-M8
Bep_C_terminal
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
ALN91718
LinkDB
All DBs
Position
complement(3083531..3085939)
Genome browser
AA seq
802 aa
AA seq
DB search
MPVAPLERQRKDNPPVTTANKKDAAQAAKRAAELHSQLDDANYRYYVLDDPTLTDADYDR
LLRELEALEAAHPELASADSPTQRVGNTPSGAFAEVTHQVPMLSLGNAFSDEEVADFVRK
IVERLDIEAPEFSVEPKLDGLAISLRYENGLFVQGATRGDGATGEDVTLNLRTVKAIPMK
LRGKGWPPVLEVRGEVYMPLAAFKTYNEKALKDGGKVLANPRNGAAGSLRQLDPRITAQR
PLAFYAYAVGVVEGYALPATHSATLRQLREWGFPVSGESGVVAGSEGLLGYYRQMGAKRD
SLPFDIDGVVYKLDDYAGQREMGFVSRAPRWAIAHKFPAQEQSTVLEAIEIQIGRTGAAT
PVARLKPVQVAGVVVTNATLHNADQIARLDVRVGDTVIVRRAGDVIPEIVRVVPEYRAPD
APQWQMPTVCPVCGSEIVREEGEAAWRCSGELSCPAQRKEAIRHFASRRAMDIEGLGDRY
IEDLSDLGYLQSVADLFKLTLDDLLEMKRRADERDGTTPETVKAGKVATKWADNLIEAID
HSRKTTLERFLFALGIQHVGESTAKALSIWLGDLQLIRQLPWPVFKRLPDVGGEVARSLG
HFFDQPGNQQVIDDLLARGVLIGDTHAPSPKLRDGLNLATLLVDLEIPKVTKIRAEQLAT
AFDSAEKLRDAPEHSYITAGLPADSAQALASWLSVKENELLLLRVGDALKRLDALTPVIS
ASSVGPLDGQTAVLTGTLSALTRDEAKTRLEALGAKVAGSVSKKTSFVVAGTEAGSKLDK
AQELGVDIWDEAKLLAFLADNE
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgccggtcgccccgctcgaacggcagcgcaaggacaacccgcccgtgacgaccgccaac
aagaaagacgccgcccaggccgccaagcgcgccgccgaactgcacagccagctcgatgac
gccaactaccgctactacgtcctcgacgacccgaccctcaccgacgccgactacgaccgc
ctgctgcgcgagctcgaagccctggaagccgcgcacccggaactggccagcgccgattcg
ccgacccagcgcgtgggcaacacgccttcgggcgccttcgccgaagtcacccaccaggtg
ccgatgctgtcgctgggcaatgccttcagcgatgaggaagtcgccgatttcgtgcgcaag
atcgtcgagcgcctggacatcgaagcgcctgagttctcggtcgaacccaagctcgacggc
ctggccatcagcctgcgctacgaaaacggcctgttcgtccagggcgcgacccgcggcgac
ggcgccaccggcgaggacgtcaccctcaacctgcgcacggtcaaggccattccgatgaag
ctgcgcggcaaaggctggccgccggtgctggaagtgcgcggcgaggtctatatgccgctg
gccgcgttcaagacctacaacgaaaaagcgctcaaggacggcggcaaggttctggccaat
ccgcgcaacggcgccgccggttcgctgcgtcagctcgatccgcgcatcaccgcgcagcgg
ccgctggcgttctatgcctacgcggtcggcgtggtcgaaggctatgcgttgcccgccacg
cattcggccacgctcaggcaattgcgcgaatggggtttcccggtcagcggcgaaagcggc
gtggtcgccggcagcgagggcttgctcggttactaccggcagatgggcgccaagcgcgac
tcgctgccgttcgatatcgacggcgtggtctacaagctcgacgactacgccggccagcgc
gagatggggttcgtctcgcgcgcgccgcgatgggcgatcgcgcacaaattcccggcgcag
gagcaatccacggtgctggaggcgatcgaaatccagatcggccgcaccggcgcggcgacg
ccggtcgcgcggctcaagccggtgcaggtcgccggcgtcgtggtgaccaacgcgaccttg
cacaacgccgaccagatcgcgcgcctggacgtgcgcgtcggcgatacggtgatcgtgcgc
cgcgccggcgacgtgattccggaaatcgtccgggtcgtgcccgagtaccgcgcgcccgat
gcgccgcagtggcagatgccgaccgtatgcccggtgtgcggttcggaaatcgtgcgcgag
gaaggcgaagcggcatggcgctgctcgggcgaactgagctgccccgcgcagcgcaaggaa
gccatccgccacttcgcctcgcgccgggcgatggatatcgaaggcctgggcgatcgctat
atcgaggatttgtcggacctgggctatctgcaatcggtcgcggatctgttcaagctcacc
ctggacgatctgctggagatgaagcgccgcgcagacgagcgcgacggcaccaccccggag
acggtcaaggccggcaaggtcgcgaccaaatgggccgacaacctcatcgaagcgatcgac
cacagccgcaagaccaccctggagcgcttcctattcgcgctcggcatccagcacgtcggc
gaaagcacggccaaggctttgtcgatctggctcggtgatctgcagctgatccgtcagttg
ccgtggccggtgttcaagcgcctgcccgatgtcggcggcgaagtcgcgcgttcgctcggg
catttcttcgaccagcccggcaatcagcaggtgatcgacgatctgctcgcgcgcggcgtg
ctgatcggcgacacccacgcgccgtcgccgaagctgcgcgacggtttgaatctggcgacc
ctgctggtcgatctggaaattccgaaggtcaccaagatccgcgccgaacaactggcgacc
gcgttcgacagcgcggagaaactgcgcgacgcgcccgagcattcgtacatcaccgccggt
ttgccggccgacagcgcgcaggcgctggcgtcgtggttgagtgtgaaggagaacgaactg
ctgttgttgcgggtcggtgacgcgctgaagcggctggatgctttgacgcctgtgatctct
gcatcttcggttggaccgctcgacggccagaccgcggtgctgaccggaacgctgagcgcg
ctgacccgcgacgaagccaagacccgtctggaagcgctgggcgccaaggtcgccggcagc
gtgtcgaagaagaccagcttcgtcgtcgccggcaccgaggccgggtcaaagctcgacaag
gcgcaggaactgggcgtggacatctgggacgaagcgaagttgctcgcgttcctggccgac
aacgaatga
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