Listeria grayi: NCTC10812_01082
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Entry
NCTC10812_01082 CDS
T06340
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lgz
Listeria grayi
Pathway
lgz03030
DNA replication
lgz03410
Base excision repair
lgz03420
Nucleotide excision repair
lgz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lgz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC10812_01082 (ligA)
03410 Base excision repair
NCTC10812_01082 (ligA)
03420 Nucleotide excision repair
NCTC10812_01082 (ligA)
03430 Mismatch repair
NCTC10812_01082 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lgz03032
]
NCTC10812_01082 (ligA)
03400 DNA repair and recombination proteins [BR:
lgz03400
]
NCTC10812_01082 (ligA)
Enzymes [BR:
lgz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC10812_01082 (ligA)
DNA replication proteins [BR:
lgz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC10812_01082 (ligA)
DNA repair and recombination proteins [BR:
lgz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC10812_01082 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC10812_01082 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC10812_01082 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC10812_01082 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
BRCT_2
Nlig-Ia
Zn_ribbon_NUD
RNA_pol_A_CTD
RNA_ligase
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
VEI33387
LinkDB
All DBs
Position
1:1103951..1105975
Genome browser
AA seq
674 aa
AA seq
DB search
MMGDKKRYEALIEELNQYSYDYYVQDNPSVEDVVYDKAMQELLKIEEAHPDWITADSPSQ
RVGGEILEGFQKVTHKTPMLSLGNAFGEDDLRDFDRRIQDRIGDGTEYEYMCELKIDGLA
VSLIYENGEYRQGATRGDGTTGEDITANLRTVRSIPIKLKETLSIEVRGETYMPKKSFQK
LNGAREEEGLPLFANPRNAAAGSLRQLDTKIAAKRNLDIFLYSVADFGDMGVTKHSEGLD
YLEKLGLKVNKERRVCKNIEEVLAYVEEWTAKRSDLAYEIDGIVVKLNDLRQQEEVGYTV
KSPRWAIAYKFPAEEVPTVLRDIELRVGRTGVITPTAILDPVHVAGTTVSRASLHNEDLI
KQKDIRIKDTVMIKKAGDIIPEVIRSLPEKRTGSEEEFHMPAHCPECGSELVRLEGEVAL
RCINPKCPAQLKEGLIHFVSRSAMNIDGLGEKVVRQLFTHELIHDVADLYFLSKEELLQL
ERMGEKSVTNLLAAIEKSKQNSLERLLFGLGIRHVGAKAARSLAIHFETMDNVKEASLED
LIAINDIGEIMADSIVTYFENEEVHSLLQELERAGVNMTYTGPRLEEVPEEDLVFAGKKV
VLTGKLEQLKRDEAKALIESLGGSVSGSVSKNTDIVVAGSDAGSKLEKAEELSIPIWSEN
DLLEYLPDEGGLIK
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgatgggggacaaaaaacgttacgaagcattgatcgaagaacttaatcaatacagctac
gattactatgtgcaagataatccgagcgtggaggacgtcgtttacgataaagccatgcag
gaacttttgaaaatcgaagaagcacatccggattggatcacagcagattcaccttcccag
cgtgttggcggagaaattttggaaggtttccaaaaagtaacgcataaaacaccgatgctt
agtttaggaaatgcctttggagaagacgatttgcgcgactttgaccgccgcatccaagac
cgtatcggtgatggaacagaatacgaatatatgtgtgaacttaaaatcgatggattggca
gtatcgttgatctatgaaaacggtgagtatcgccagggagcgacccgcggcgatggaaca
accggagaagatatcacggccaatttacggacagtgcgttcgatcccaatcaaattaaaa
gaaactttgtcgattgaagtgcgtggcgagacctatatgcccaaaaaatcattccaaaag
ttgaatggagcgcgggaagaagagggactaccattattcgcaaatccacgcaatgcagca
gcgggatcgttacgtcaattagacacgaagatcgctgcaaaacggaatctggatatcttt
ctttattccgttgccgatttcggcgatatgggtgtgacaaagcatagcgaaggccttgat
tatttagaaaaactgggattaaaagtcaataaagagcgccgcgtctgcaaaaatatcgag
gaagtacttgcttacgtcgaagaatggaccgccaaacgttccgatctagcctacgagatc
gatgggatcgttgttaaactgaacgaccttaggcagcaggaagaagttggctacaccgtc
aaatcgccgcgctgggcgatcgcgtacaagtttccagcagaagaagtgccgacggtcctg
cgtgatatcgaactacgcgtgggtaggacgggtgtcattaccccaacggcgatccttgat
cccgttcatgtggcgggaacgactgtcagccgagcatcccttcacaatgaagacctgatc
aaacaaaaagatattcgtatcaaggacactgtcatgatcaaaaaggcaggcgacatcatt
cctgaagtgatccgcagtctccctgagaaacgtacaggcagtgaggaagaatttcatatg
ccagcgcattgtccggaatgcggcagtgaattagtacggctggaaggcgaagttgccttg
cgttgtattaatccgaagtgtccggcacagcttaaagaaggccttatccactttgtttcc
cggtcggcgatgaacattgacggcttgggagagaaagtagttcggcagctgtttacgcat
gaattgatccacgatgtcgcagatctctatttcctttctaaagaggaattgttacaatta
gaacgaatgggtgaaaagtcagtcaccaatttgctggcagccattgaaaaaagcaagcaa
aactcattagaacggctgctgttcgggcttggcatcagacatgtcggagcgaaggcagca
cgatcacttgcgattcattttgaaaccatggataatgtgaaggaagcatctttagaagac
ctcatagctatcaatgatataggggaaatcatggcggattcgatcgtgacttattttgaa
aatgaagaagtccacagtctgcttcaggaattagaacgtgcaggtgtcaatatgacgtat
actggtccgcgtttagaagaagttccggaagaagacctcgtgtttgctggtaaaaaagtt
gttttgactgggaaattggaacaactgaaaagagacgaagcaaaggcgctgattgaatcg
ctgggcggcagtgtttctgggagtgtaagtaaaaatacagatattgttgtagctggcagt
gatgcaggttccaaactggagaaagcagaagaactgagcatccctatctggtctgaaaac
gaccttttagaatatttaccagacgaaggcggattgataaaatga
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