Schleiferilactobacillus harbinensis: D1010_03985
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Entry
D1010_03985 CDS
T06855
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lhb
Schleiferilactobacillus harbinensis
Pathway
lhb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lhb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D1010_03985 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lhb03021
]
D1010_03985 (rpoC)
03400 DNA repair and recombination proteins [BR:
lhb03400
]
D1010_03985 (rpoC)
Enzymes [BR:
lhb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D1010_03985 (rpoC)
Transcription machinery [BR:
lhb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D1010_03985 (rpoC)
DNA repair and recombination proteins [BR:
lhb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D1010_03985 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
PRC_RimM
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QFR22662
UniProt:
A0A510TY47
LinkDB
All DBs
Position
813329..817060
Genome browser
AA seq
1243 aa
AA seq
DB search
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPERDGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVIDPGDSDLEKKQLLTEREYREKREQFGDSFNAKMGAEAVKELLR
DVDLQKEVVELKEELKTASGQKRTRSIRRLDILDAFLESGNKPEWMVMDVIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLHAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPTLKFYQCGVPRE
MALELFKPYVMRELVKRNLASNIKNAKRQIERQNDDVWDVLEDVIKERPVLLNRAPTLHR
LGIQAFEPVLVDGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAQAEARMLMMAAHHIL
APKDGKPIVTPSQDVVLGNYYLTLEDKGRRGEGMIFKDTNEAVMAYRTGKVHYHTRVGLA
IDGLKQKPFTDAQRHQILVTSIGKILFNEILPDDFPYLNEPTTENLTNGVPDKYFLKAGQ
DIHDYLDNAELIQPFKKGYLSDIIAQVFKIYKVQRTSELLDDMKTLGYTISTLSGITVGI
ADVPELADKQEIVDDAHKKVATVSKQFRRGLITDEERHNRIISIWNEAKDTIQQRLIDSF
DPANPISMMSDSGARGNISNFTQLAGMRGLMAAPNGGMMEVPVTSNFREGLSVMEMFMST
HGARKGMTDTALKTANSGYLTRRLVDVAQDVIVREEDCGTDRGVKVSAIREGNEMIEPLH
DRIFGRFTMKAVMDPKTGEVIAPKNTLIDEDLAEKIVDAGVESVTIRSVFTCNTQHGVCR
RCYGRNLATGEEVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGGEDITQGLPRVQEI
VEARNPKGLSVITEVTGEITAIDENPAEHTREITVEGKTDTRTYSVPYASSVTVKEGDHV
HRGDKLTVGSIDPKELIKVRDALTTENYLLDEVQKVYRMQGVDISDKHIEVMIRQMLQKV
RVMDPGDTDILPGTLLDIADFGEQNRQTLIKGSIPATARPVLLGITKAALETNSFLSAAS
FQETTRVLTDASIRGKNDPLIGLKENVIIGKIIPAGTGMAKYREMEPKTVGEKPESVYSI
SDIEAQMKRQSASDGTAADGTAPDDDPSISATKTATKPKDSDK
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
ttgatagacgtcaataaatttgaaagcatgcaaatcggcttggcgtctccggataagatc
cgttcgtggtcttacggagaagttaagaagccggaaaccatcaactaccggacgttgaag
cccgagcgcgatggcttgttcgacgagcgtattttcggtccgaccaaggactgggaatgt
gcctgcggcaagtacaagcggattcggtataagggcattgtctgcgaccggtgcggcgtc
gaagtgacccgctccaaggttcgccgggaacgcatgggccatattgaattggccgctcct
gtttcccacatctggtacttcaagggcatcccttctcggatgggcttggtactcgatatg
tcccctcgggcactggaagaaatcatctacttcgcttcctacgtcgtcatcgatcctggt
gattctgatctggaaaagaagcagctgctcacagaacgggaataccgcgagaagcgtgaa
caattcggcgacagcttcaacgccaagatgggtgcagaagccgtcaaggaactgttgcgc
gatgttgatttacaaaaggaagtcgttgaacttaaggaagagctcaagacggcttctggc
caaaagcggacccgctcgatccgccggttggacattctggatgccttcctggaatccggc
aacaagccggaatggatggtgatggatgtcattccggtgatcccgccggatctgcggccg
atggttcaactcgaaggcggccggtttgccacctctgatttgaatgatctgtatcgccgg
gtcatcaaccgtaataatcggttgaagcgcctgcttgacctgcatgccccgaacattatc
gtccaaaacgaaaagcggatgctccaagaagccgttgacgcgctgatcgataatggccgg
cgcggtcggccagtgactggtccgggtaaccgtccgctcaagtccctgtcccatatgctg
aagggtaagcagggccggttccggcagaacttgctgggcaagcgggttgactactctggc
cggtccgttatcgatgttggcccgacactgaagttctatcagtgcggggtcccccgggaa
atggccctggaattattcaagccctatgtcatgcgggaactggtcaagcgtaacttggcc
tccaacatcaagaacgccaagcgccaaattgaacggcaaaacgacgatgtctgggacgtc
ctcgaagatgtgatcaaggagcggccggttctgttgaaccgggccccgacattgcaccgt
ttggggatccaagcctttgagccggtactggttgatggtaaatccattcgtctccatccc
cttgcttgtgaagcctacaacgccgacttcgatggggatcagatggcgatccacgtaccg
ctgtctgatgaagcccaagctgaagcgcggatgctgatgatggctgcccaccatattctg
gcgcctaaggatggcaagcccatcgttacgccgtctcaggacgtcgtattggggaactac
tacctgacgctggaagataagggccgccgcggtgaagggatgatcttcaaggatacgaat
gaagccgtcatggcttatcgtaccggcaaggttcactaccacactcgggttgggttagcg
attgacggtttgaagcaaaagccgttcacggacgcccagcgccaccagattctggtgacc
agcatcggcaagattctcttcaacgagattctgcccgatgacttcccttatttgaacgag
ccgacgactgagaacctgaccaacggggtacccgataagtacttcctgaaggcggggcaa
gatatccatgattatttggataacgcagaattgattcagccgtttaagaagggctacctg
agcgatatcattgcccaagtattcaagatctataaggtacaacggaccagcgaattgctg
gatgacatgaagactttgggttacaccatctccacgttgtccgggatcacagtcgggatc
gccgatgtaccggaattggctgataagcaggaaatcgttgacgatgcccacaaaaaggta
gcgacggtttccaagcagttccggcggggcttgattaccgacgaggaacgtcataaccgg
atcatcagcatctggaatgaagccaaggacaccattcaacaacgcttgatcgatagtttc
gatccggcgaaccccatctccatgatgagtgattccggtgcccggggtaacatttctaac
ttcactcagctggctgggatgcggggcctgatggccgcgccgaacggcgggatgatggaa
gtcccggttacctcgaacttccgtgaaggcttgtccgtcatggaaatgttcatgtccact
cacggtgcccggaagggtatgactgatacggccttgaagaccgccaactccgggtatttg
acccggcggctggtcgacgtggcccaagacgtcattgtccgtgaagaggactgtggtacg
gatcgcggtgtgaaggtttcggccattcgtgaaggtaacgaaatgattgaaccgctccac
gaccggatcttcggccggttcacgatgaaggcggtcatggatcctaagacgggcgaagtc
atcgccccgaagaataccctgatcgacgaagacctggctgaaaagatcgtcgacgctggt
gttgaaagtgtcacgattcgttccgtcttcacctgcaacacgcagcatggtgtctgccgt
cgctgctatggccggaacttggctactggtgaagaagtcgaagtcggcgaagcagtcggt
acagttgctgcgcagtccatcggcgaacctggtacccagttgaccatgcggaacttccat
accggcggtgttgccggcggcgaagatattacccaagggcttccccgtgtgcaagaaatt
gttgaagcgcggaatcctaaaggtctgtcggtcattactgaagtcaccggtgagatcacg
gccattgatgagaacccggctgaacatacccgggagatcaccgtggaagggaagaccgat
acccggacttacagtgtgccttatgcgtccagtgtcacggtcaaggaaggcgaccacgtc
catcgtggcgacaagctgaccgttggttcgatcgacccgaaggaactgatcaaggtccgc
gatgcgctgactaccgagaactacctgctggatgaagtccagaaggtataccggatgcag
ggtgtggatatcagcgataagcatatcgaagtcatgatccgccagatgctccagaaggtg
cgggtcatggatccgggcgacaccgacattctgccgggtaccctgctcgatatcgctgat
ttcggcgaacagaaccggcaaaccctgatcaaggggagtatccccgccactgcgcggccg
gtactgctcgggatcaccaaggctgctctggagaccaacagcttcttgtctgctgcgtcc
ttccaggaaacgactcgggtattgaccgacgcatcgatccggggcaagaacgacccgtta
atcgggttgaaggagaacgtcatcatcgggaagatcattccggctggtaccgggatggcg
aagtaccgcgagatggaaccgaagactgtcggcgagaagccggagagtgtttattccatt
tccgatatcgaggcgcagatgaagcgtcagtcggccagtgatggtacggctgccgatggc
actgcaccggacgatgatccgtcgatttcggcgacgaagacggcgacgaagcctaaggat
tcggataagtaa
DBGET
integrated database retrieval system
