Schleiferilactobacillus harbinensis: D1010_05385
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Entry
D1010_05385 CDS
T06855
Name
(GenBank) MBL fold metallo-hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lhb
Schleiferilactobacillus harbinensis
Pathway
lhb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1010_05385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhb03019
]
D1010_05385
Messenger RNA biogenesis [BR:
lhb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D1010_05385
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GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
Lactamase_B_3
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QFR22919
UniProt:
A0A5P8M359
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Position
complement(1094422..1095645)
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AA seq
407 aa
AA seq
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MTTLRFLNGLDTIGGNIVEIAQGDSRVIMDFGVTTIDPQLSIDNMIAQHQLPHLPELFHP
ELPDKFQHEAIFISHLHIDHMGALQYLQRDIPIYLSPDAYQLYQVLIAQHMEAPVANLHI
LPYEQPLTVGSLQVTGFASDHDTVGAMALLVDDGRQCFAHSGDVRLNGPHADRVLNWSRV
LKTRRVKVFMLEGTTFSFSAPVPVEDADQPATPLTEATLAAKFQDLLHDQPATQFILNVY
PRNVERLLALDKIARQADRPIIWEPEFAAVLHAFAPDTPLTTFGPDTMAAIQANPGRFVL
QNSYAHLARLTALPRPAVYLHSNGEPLGDYDPRFAQLKDFLAAADIPFTFLSATGHAQRA
DLITLAERVHAMYVVPWHTFKPQAMADALAPTYSDVLLPERDLYYEF
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
ttgactacgttacggtttttaaacggtttagacaccatcggcggaaatattgtcgaaatc
gcccagggggattcccgggtaatcatggatttcggcgtcaccaccattgatccgcagtta
tccattgacaatatgattgcccagcatcagctgccccacctgcccgagttgttccatcct
gagctgccggacaagtttcagcacgaggccatctttatttcccacctgcacatcgatcac
atgggggctttgcagtatctgcaacgggacatccccatctatctgagtcccgacgcttat
cagctttatcaagtcttgattgcccagcacatggaagcacccgtcgctaatttgcatatc
ttgccctacgaacagcccttaacagtgggcagtttacaggtcaccggctttgccagtgat
cacgatacggtcggagcgatggcgctgttggtggatgatggccgccaatgctttgcccat
agcggggacgtccgtttgaatggaccccacgccgaccgcgtgctaaactggtctagagtg
ctgaagactcggcgggtcaaagtattcatgctggaagggacaacattcagcttttctgcc
ccggttcctgtagaagatgcagaccagccggcgacacccttaactgaagcaacgcttgcc
gctaaatttcaagatttgctgcacgatcagccggcgacccaatttattttgaatgtttat
ccccgcaacgtggaacggttgctggccctagacaaaattgcgcgccaggctgatcggcca
atcatttgggaaccggaatttgctgccgtcttgcatgcctttgccccggacacgccgctc
acgacgtttggtccggacaccatggcagcaattcaagcgaatcccggtcggtttgttttg
caaaacagttatgcccatctggcccgactgactgccctcccccgaccggctgtttatctg
cactccaacggcgagccgctgggtgattacgatccccgttttgcgcagttgaaggacttc
ctggcagccgctgatattcccttcacttttttatcagccaccggtcatgctcagcgggca
gatttgatcaccctggccgaacgcgttcacgccatgtatgtggttccctggcacaccttt
aagccccaagcaatggcggatgcgttagccccaacgtatagtgacgtcctactccctgaa
cgggatttgtactacgaattttaa
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