Schleiferilactobacillus harbinensis: D1010_09215
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Entry
D1010_09215 CDS
T06855
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lhb
Schleiferilactobacillus harbinensis
Pathway
lhb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lhb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
D1010_09215 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lhb03021
]
D1010_09215 (rpoD)
Transcription machinery [BR:
lhb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
D1010_09215 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
MCM4_WHD
DNA_Packaging_2
HU-HIG
WH_RGF3
Motif
Other DBs
NCBI-ProteinID:
QFR23572
UniProt:
A0A5P8M4Z1
LinkDB
All DBs
Position
complement(1789166..1790281)
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AA seq
371 aa
AA seq
DB search
MAKETNTVSKKDLTKAVTALVKEYRPKKQITNEELVERIVKPFKLESNDIDDVMQKVEDN
GISIVDENGEPAERSLKKEKAVSKKELRDLSAPTRVKINDPVRMYLKEIGRVPLLTADEE
VELALKIEQGDEEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDY
RKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPE
EIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDHDATSPEEHASNELLK
EQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHP
SRSKQLKDFLD
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atggctaaagaaaccaatacggtatccaagaaagacttgaccaaggccgtgactgcctta
gttaaggagtaccgacccaagaagcaaatcacaaatgaagaactcgttgaaagaattgtg
aaacccttcaaactcgagtccaacgacattgatgatgtgatgcagaaggtcgaagacaac
ggcatcagcatcgttgacgagaacggcgaaccagctgaacggagcctgaagaaagaaaag
gctgtttcgaagaaggaattgcgtgatttgtccgcgcccactcgcgtgaagatcaacgat
cctgtacgcatgtatctgaaggaaatcggccgggtgccgctgttaactgcggacgaagaa
gtcgaattagccctgaagatcgaacagggcgatgaagaagccaagcagcggttagcagaa
gccaacttacgcttggtggtttccattgccaagcgttacgtcggccggggcatgcagttc
ctggacctgatccaggaagggaacatgggcctaatgaaggccgtcgagaaattcgactac
cgcaaagggttcaagttctccacttacgccacgtggtggattcgccaggcgattacccgg
gcgattgccgaccaggcgcggaccattcggatcccagtccacatggttgaaaccatcaat
aaactgattcggatccagcggcagctgctgcaagatctaggccgggaaccaacaccggaa
gaaattggtgccgagatggatctgcctacggagaaggtgcgggaaatcttgaagattgcc
caagaaccagtttctctggagacacccatcggcgaagaggatgattcccacttaggggac
ttcatcgaggaccacgacgccaccagtccggaagagcatgcgtctaacgaactgctcaag
gaacagttggagagcgttctggacacgctgactgatcgagaagaaaacgtcctgcggttg
cgcttcggcttggatgatggtcggacccgcactctggaggaagtcggcaaagtattcggc
gtcaccagagaacgaattcgccaaatcgaggccaaggccctgcgcaagctgcgccacccg
tctcgctcgaaacaattgaaggatttcttggattaa
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integrated database retrieval system
