Schleiferilactobacillus harbinensis: D1010_10290
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Entry
D1010_10290 CDS
T06855
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
lhb
Schleiferilactobacillus harbinensis
Pathway
lhb03030
DNA replication
lhb03430
Mismatch repair
lhb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lhb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D1010_10290
03430 Mismatch repair
D1010_10290
03440 Homologous recombination
D1010_10290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lhb03032
]
D1010_10290
03400 DNA repair and recombination proteins [BR:
lhb03400
]
D1010_10290
Enzymes [BR:
lhb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
D1010_10290
DNA replication proteins [BR:
lhb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
D1010_10290
DNA repair and recombination proteins [BR:
lhb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
D1010_10290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
DNA_pol3_a_NI
HHH_6
tRNA_anti-codon
RNase_H_2
HHH_3
YhfH
Zn-ribbon_8
DUF6120
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
QFR23759
UniProt:
A0A5P8M5K6
LinkDB
All DBs
Position
complement(1989158..1993483)
Genome browser
AA seq
1441 aa
AA seq
DB search
MALSPEEMLTQLLDQIHFAVSADGGDRFAGGAVEKVIVHEQTKQWEFVLRLPQILPFSVY
SVFLADLTKAFADIASVAVRLHVAQPEFDDHLLADYWPYVVKTCAASSPALAQVNAPQMQ
GDRVAISVDNEVVKNYVVENALSCVEEAYARLGFPDFHIHVYVDESATQEKIDAMRQQQE
QQNQELATQALLKAQEKAAAGPAGNGSGAPSSDGVHIGKPIPADAPIRQMADITEPDRSL
VVQGKIFSSEVRDLRSGKQMLLFEITDYTSSFKVKAFSRETGTDPNFAQVAVGQWVKVRG
PVEEDKYSQELTISAYDVQTMAHAARQDTAAGDKRIELHLHTTMSQMDATNSPTDYVNQA
AQWGMPAIAVTDHAVAQAFPEAHSAGLKNKIKVMYGVEINLVDDATPIAYNLRDQPLTGD
EEYVVFDIETTGLSAPTDRIIEIGAVKMKNNKVLAKFDEFINPGFPLSATTINLTTITDE
MVQSGGSEEEIIKKFTDFVGDAIVVGHNVTFDIGFINVARKRLGWPAVPNPIVDTLIMSR
TLHPERGRHTLDSLSRVYKITLTQHHRASDDSEATGYLYFALLKEMMARFNTANVNQLND
HAGEKEAWKTGRPSHAILIAKTQAGLKNLFKIVSFSLTDYFHRVARVPRSMLNKYREGII
VGSGCADGEVFTAMMQKGYEDARKLAEYYDYLEVQPHAAYQPLIATELIKDNDQLEDLLK
NMVKLGKELDKPVVATGDVHFMNPEDAIYREILQRSMKINAHRKLYFPDLHFRTTDEMLT
DFAFLGEETAHQVVVDNTHTVADWVADDITPVKDKLYTPHMPGAEEDIRRLTMTQAKEWY
GDPLPDIVQARLDKELKSIIGNGFSVIYLIAQKLVHKSNKDGYLVGSRGSVGSSLVATMT
GITEVNPLPPHYRCPHCHYSEFFDKGEVGSGFDLPDKKCPKCGTELIKEGQDIPFETFLG
FKGDKVPDIDLNFSGDYQPIAHNYTKVLFGEDYVYRAGTIGTVAEKTAYGYVLHYQEVTE
QKIRGAEIDRLAAGCTGVKRTTGQHPAGIIVVPDDMDIYDFTPIQYPADDTDAAWKTTHF
DFHSIHDNILKLDILGHDDPTMIRTLQDLSGVDPKTIPYDDPGVMGLFSGTEPLGVTEDQ
IQSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDVWLGNAEELIQKGVVK
LKDVIGCRDNIMMDLIHWGLDSQLAFQIMEHVRKGRGIPDEWQDKMRENKNIPSWYIDSC
LKIKYMFPKAHATAYIEMALRIAWFKVYYPLAYYCAYFSVRADDYDLVAMTHGKETIKEA
MQTINDKGNDATAKEKGLLTVLEIANECWERGIRIQMVDINQSEAQEFKIVDDHTLLAPF
NAIPSLGDRVAKNIVAARAEKPFLSKEDISVRGGVSKTIMEYLDKNGVVNDFPDENQLSL
F
NT seq
4326 nt
NT seq
+upstream
nt +downstream
nt
ttggcattgtcacctgaagaaatgttgacccaactcctcgaccagatccactttgcggtc
tccgccgatggcggggaccgttttgctggcggcgccgtggagaaggtcattgtgcatgaa
cagaccaaacagtgggaattcgtgctgcgtttgccccaaatcctgccattctctgtgtat
agtgtcttcctcgctgatctgaccaaagcgtttgcggatatcgcgtccgtggcggttcgg
ctgcacgtggcccaacccgaatttgacgaccatttgctggctgattattggccatacgtg
gtgaaaacctgtgccgcctcgtcccctgccctggcccaagtgaatgccccgcaaatgcag
ggcgaccgggtggcgatcagtgtcgacaacgaagtagtcaaaaattatgtcgtggaaaac
gcactgagctgtgttgaagaagcctatgcccggttgggcttcccggatttccatatccac
gtctacgttgatgagtctgcgacccaagaaaaaatcgacgccatgcgccagcagcaggag
cagcaaaaccaagagctggcgacgcaagctctgctgaaggcccaggaaaaggccgcggcc
gggccggctggtaacggcagtggggcccccagcagcgatggtgtccacatcggtaagccg
attcccgccgacgcgccgattcgccagatggcggatatcaccgaaccagaccggtccctg
gtggttcaggggaagattttctccagtgaagttcgggatctgcgcagcggcaaacaaatg
ctgctgtttgaaatcactgattacacctcttccttcaaggtcaaggccttctcccgggaa
accggcaccgatccgaattttgcgcaagtggctgtcggccaatgggtgaaagtccgcgga
ccggtggaagaggataaatattcccaagaattgaccatcagtgcctacgatgttcagacg
atggcccacgcggcgcggcaagataccgctgcgggggataaacgtatcgaactccatctg
cacaccacgatgtcccagatggacgctactaattctcccaccgattacgtcaaccaagcg
gcgcagtggggcatgccggcgattgccgttactgatcacgccgtcgcccaggcattcccg
gaagcccactcggcgggcttgaagaataagattaaagtcatgtacggggtggaaatcaac
ctggtagatgatgccacgccaatcgcctacaatttgcgcgatcaaccgcttaccggtgat
gaagaatatgttgtattcgatattgaaaccaccgggttgtccgcacccaccgatcggatc
attgaaattggcgcggtgaagatgaagaacaacaaggtgttggcgaaattcgatgaattc
atcaaccccggctttccgttaagtgcgacgacgatcaatttgaccacgatcaccgacgag
atggtccaaagcggcgggtctgaggaagaaattatcaaaaaattcaccgactttgtgggt
gacgcgattgtcgtcggccacaatgtcaccttcgatatcggcttcatcaacgtcgcccgc
aagcgcttaggctggccggcggtacccaatcccatcgtcgacacgctgatcatgtcccgc
accctgcatccagaacggggccggcacaccctggacagcctgtcgcgggtgtataagatc
actttgacccagcaccaccgggcctctgacgattcggaagcgaccggctatttgtatttt
gctttgctgaaagaaatgatggcccgcttcaataccgccaatgtcaatcagctgaatgat
cacgcgggtgaaaaagaagcctggaagaccggccggcccagccacgctattttgattgcg
aaaacccaagccggcttgaagaatctgttcaagatcgtgtccttctctttgacggattat
ttccaccgggtggcccgcgtcccccgcagtatgcttaacaagtaccgggaaggaatcatt
gtcggcagcggctgtgcagacggcgaagtgttcaccgccatgatgcaaaaggggtatgaa
gatgcccgcaaattggccgagtattacgattatctggaagtccagccccatgcagcttac
cagccactgatcgccacggaattgatcaaggacaacgaccagctggaagacttgctgaag
aacatggtgaaactcggcaaagaattggacaaaccggtggtggccaccggtgatgtgcat
ttcatgaacccggaagacgccatctaccgggagattttgcagcggtcgatgaagatcaac
gcccaccgcaagctgtatttcccggatctgcacttccggactacggatgaaatgctgaca
gactttgcttttctgggcgaggaaacagctcatcaggtcgtcgttgataacacccatacg
gtggccgattgggttgctgacgacattaccccggtgaaggacaagctgtatacgccgcat
atgcccggcgcggaagaagatatccgccgactgaccatgacccaggctaaagaatggtac
ggcgatccgctgccggatattgtccaggcccgcttggataaggaacttaagagtatcatc
ggcaacggcttctcggtcatctacctgattgcccagaaactggtgcacaagtccaataag
gacgggtacttggttggttcccggggcagtgtcggctcctctctggtcgcgactatgacc
gggatcaccgaagttaatccgctgccgccccattatcgctgtccgcactgccactactca
gaattcttcgataagggggaagtcggctccgggtttgacttgccggataagaaatgcccc
aagtgcggcacggaattgatcaaagagggccaggatattcccttcgaaactttcttaggg
ttcaaaggggacaaggtacccgatatcgatctgaacttctccggggactatcagcccatc
gcccataactacaccaaggtgctgttcggcgaggactacgtgtaccgggccgggaccatc
ggcacggtggcggagaagaccgcctacggctatgtcctgcattaccaggaagtcacggaa
caaaagatccgcggcgccgagattgatcggttggcggcgggctgtaccggggtcaaacgg
accaccggccagcacccggcggggatcatcgtcgtgccggacgacatggacatctacgat
ttcaccccgatccagtaccccgcagatgatacggacgctgcctggaagacgacccacttt
gatttccactccatccacgataatatcttgaagctggatattctgggccacgatgacccg
accatgatccggaccttgcaagatctttcgggggtcgacccgaagacaattccttacgac
gatccaggtgtgatgggcctgttttccggtactgaaccgctgggcgtcacggaggaccag
attcaatcaaagaccggtaccctggggattcccgaatttgggacccgcttcgttcgggga
atgctggaagaaacccatccgacgacatttgctgaattgcttcagatttctggtctgtcc
cacgggaccgatgtctggctgggtaacgccgaggagttgatccaaaagggcgtcgtcaag
ctgaaggatgtcatcggctgtcgggataacatcatgatggacttgattcactggggcctg
gattcccagttggccttccagatcatggagcacgtccggaagggccgggggatccccgac
gagtggcaggataagatgcgggagaataagaacattccttcctggtacattgattcctgt
ttgaagatcaagtacatgttccccaaggcccacgccactgcctatattgaaatggcgctg
cggattgcctggttcaaagtgtactatccgttggcatactattgtgcctacttctccgtg
cgggccgacgactatgacctggttgccatgacccacggcaaggagaccattaaagaagcg
atgcagacaatcaacgacaaaggcaacgacgcgacagccaaggaaaagggcctgctgaca
gtgctggagattgccaacgagtgctgggagcggggcatccgcatccagatggtggacatc
aatcagtctgaagcccaagagtttaagatcgtcgatgatcacacactgctggccccgttc
aacgcgatcccttccctcggggaccgggtggccaagaatattgtcgctgcccgggcagaa
aaaccgttcctgtcgaaagaagatatttccgttcgcggcggggtttccaaaacgataatg
gaatatctggacaagaatggcgtcgtcaacgacttcccagacgaaaatcagctgtctctg
ttctaa
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