Lactobacillus helveticus DPC 4571: lhv_0551
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Entry
lhv_0551 CDS
T00625
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lhe
Lactobacillus helveticus DPC 4571
Pathway
lhe03030
DNA replication
lhe03410
Base excision repair
lhe03420
Nucleotide excision repair
lhe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
lhv_0551
03410 Base excision repair
lhv_0551
03420 Nucleotide excision repair
lhv_0551
03430 Mismatch repair
lhv_0551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lhe03032
]
lhv_0551
03400 DNA repair and recombination proteins [BR:
lhe03400
]
lhv_0551
Enzymes [BR:
lhe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
lhv_0551
DNA replication proteins [BR:
lhe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
lhv_0551
DNA repair and recombination proteins [BR:
lhe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
lhv_0551
NER (nucleotide excision repair)
GGR (global genome repair) factors
lhv_0551
MMR (mismatch excision repair)
DNA ligase
lhv_0551
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
lhv_0551
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
RNA_pol_A_CTD
bCoV_SUD_C
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ABX26731
UniProt:
A8YTZ3
LinkDB
All DBs
Position
540517..542523
Genome browser
AA seq
668 aa
AA seq
DB search
MAKITLDEAKKEAASLRTKLDEWADAYYSKDAPEVEDNVYDQSYNRLLELEKAFPEIVTP
DSITQRVGGEIDSDFTKVNHPIPMLSMGDVFSKDELKEFDQRMQKLVGHPVEYNVELKID
GLSLSLEYQDGKLVRASTRGNGYIGEDVTANARYIADIPQVLPEPLTIEVRGECYMGKEA
FAKLNQEREDEGLSVFANPRNAAAGSLRQLDPKVTKKRQLSTFIYTWVNPPREITSQHQA
IERMHELGFHTNETGRKLANLDEVFDFIDEYTAKRNSLTYGIDGIVLKVDDLSLEQQLGN
TVKVPRWEIAYKFPPEEQETIVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVARASLHNPD
YLNEKGVRIGDTVKLHKAGDIIPEISEVVLSKRPADSVPYEIPTTCPSCGQKLVHLEDEV
ALRCINPSCPAQVEEGIIHFASRPAMNIAGLGPKIVKQLIAKDLVHNVADLYHLTEDDLA
QLDHFKEKSINNLLTAIDNSKKNSVELLITGLGIDHVGAKAARLIAQKFKNLEKIMSLGV
QDIASIDTIGMTTAESMTTYFAQPEAQKLIEELRESGLNMDYLGADEPEEAPDNPFKDKT
VVLTGKLEHYTRSEFTKKLQALGAKVTGSVSHKTDYVIYGKDAGSKYNKAEQLGVPLLTE
EEAIAQIE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggctaagattactcttgatgaagctaaaaaagaagcagcttctcttagaaccaagcta
gatgaatgggccgatgcgtattattcaaaagatgcgcctgaagttgaagataatgtttat
gatcaaagttataatcgattacttgaactagaaaaagctttccctgaaattgttacgcct
gattcaattactcagcgtgtaggtggagaaatcgatagtgattttacaaaggttaaccac
ccaattcctatgctttcaatgggggatgtcttttcaaaagacgaactcaaggaatttgac
caaagaatgcaaaagttggttggtcatcctgttgaatataatgtcgagttaaagatcgat
ggtttatccttgtctcttgaatatcaagatggcaaattggttcgcgcttcaactcgaggc
aatggttatattggtgaagacgtaacggctaatgcgcgttacattgcggatattccccaa
gttttgccggagcctttgactattgaagttcgcggtgaatgttacatgggaaaagaagct
tttgccaagttgaatcaagagcgtgaagatgaaggtttgagcgtgtttgctaatccacgt
aacgctgctgccggttcacttcgtcagcttgatcctaaggttactaaaaagcggcaactg
agtacctttatttatacatgggttaatccaccacgcgagattaccagtcagcaccaagca
attgagcgcatgcatgaattgggttttcatactaatgaaactggtcgtaaattggctaat
cttgatgaagtatttgattttatcgacgaatacacggctaagcgtaatagcttaacttat
ggcattgatggtattgttttaaaagttgatgatttaagccttgaacagcaattagggaac
accgtgaaggtgccacgctgggaaattgcttataagtttccaccagaagagcaagaaaca
attgtgcgtgatatcgtttggacggtaggtcgtaccggtgttgtaacacctacggcggtg
atggatcctgttcaattagcagggacaacagttgccagagcttcattacacaatccagat
tacttaaatgaaaaaggcgttagaatcggggacaccgttaagcttcataaagctggcgat
attattcctgaaatttctgaagtagttttatcaaagagacctgcagattctgttccttat
gagattcctactacttgcccatcctgtggacaaaaattagttcacttagaagatgaagta
gccttacgctgcattaatccatcatgtccagctcaagttgaagaaggaattatccacttt
gcttctcgtcctgcgatgaatattgcgggcttaggtccaaaaattgttaaacaattaatt
gctaaggatttagtacataatgttgctgatctataccatttaacagaagatgatttagct
cagcttgatcactttaaagaaaagtctattaacaatttgttaacggcaattgataattcg
aaaaaaaattctgttgaattattgattactggcttaggaattgaccatgttggagctaaa
gcagctcgtttaattgcacaaaagtttaaaaatctggaaaagattatgtccttaggggtg
caagatattgcttcaatcgatacaataggcatgacgactgcagaatcaatgacaacatat
tttgctcaacccgaagcacaaaaattaattgaagaattaagagaaagtggtcttaatatg
gattacttgggtgcagatgaaccagaagaagcaccagataatccatttaaagataaaact
gttgttttaaccggtaagttagagcattatacaagaagcgaatttactaagaaattgcaa
gctttaggtgctaaggttacaggatctgtatcacataaaactgattacgtaatttatggc
aaagatgctggatctaagtataataaggctgagcaattaggggtaccacttctgactgaa
gaagaggcaatcgcacagattgaataa
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