Laribacter hongkongensis: LHK_02877
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Entry
LHK_02877 CDS
T00884
Symbol
dnlJ
Name
(GenBank) DnlJ
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lhk
Laribacter hongkongensis
Pathway
lhk03030
DNA replication
lhk03410
Base excision repair
lhk03420
Nucleotide excision repair
lhk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lhk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LHK_02877 (dnlJ)
03410 Base excision repair
LHK_02877 (dnlJ)
03420 Nucleotide excision repair
LHK_02877 (dnlJ)
03430 Mismatch repair
LHK_02877 (dnlJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lhk03032
]
LHK_02877 (dnlJ)
03400 DNA repair and recombination proteins [BR:
lhk03400
]
LHK_02877 (dnlJ)
Enzymes [BR:
lhk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LHK_02877 (dnlJ)
DNA replication proteins [BR:
lhk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LHK_02877 (dnlJ)
DNA repair and recombination proteins [BR:
lhk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LHK_02877 (dnlJ)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LHK_02877 (dnlJ)
MMR (mismatch excision repair)
DNA ligase
LHK_02877 (dnlJ)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LHK_02877 (dnlJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Nlig-Ia
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ACO75856
UniProt:
C1D4R5
LinkDB
All DBs
Position
complement(2778260..2780338)
Genome browser
AA seq
692 aa
AA seq
DB search
MTDLNPTARAAGLRALLHRYNHEYYVLDAPSVPDAEYDRLFRELEALEAAHPELASADSP
TRRVGGAPLAAFASVTHRLPMLSLNNVFSDMQDSDPAGRHAELAAFDQRVRDGLGLDEVE
YAVEPKFDGLAVSLVYEHGVLVQGATRGDGETGENVTENLRTVRSIPLRLENAPGDDLFA
PAVVPARLEVRGEVLMLKRDFERLNSEQDAAGLKRFANPRNAAAGSLRQLDSRITASRRL
TFFAYAVAEADGVSLPATHSATMDWLAGLGLPVSRQRSVVRGLAGLTGAYEAMLAQRAGL
PFDIDGVVYKVNRLSEQARLGFVSRAPRFAVAHKFPAEEALTVVEDITVQVGRTGAITPV
ARLQPVFVGGVTVTNATLHNEDEVRRKDVHVGDTVIVRRAGDVIPEVVSVLAERRPPQAR
AFEMPLVCPVCGSHIVREADEAVARCSGGLYCSAQHKQALQHFASRKALDVEGLGEKLVD
QLVDAGLVHTPADLFALDQPALARLERMGDKSAENLVRALDACRHTTLARFVYALGIRNV
GEATARDLARHFGTLDALMAADQDMLMTAPDVGPIVARSIVDFFAEAHNREVVDALLAAG
VSWPVVETVTSAGVAGVSGKTFVLTGTLPTLGRDDAKARIEAAGGKVTGSVSKKTHYVVA
GEAAGSKLDKAHELGITVLDEAALLALLAGNA
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacctgaacccgacggcgcgcgcagccggactgcgcgcgcttttgcatcgttac
aaccacgaatattacgtactcgacgcccccagcgtgccggatgccgagtacgaccgcctg
ttccgcgagctggaagcgctggaagcagcgcatccggagctggcgagtgccgactcgccg
acccgccgggtcggtggcgctccgctggcggcctttgccagcgtgacgcaccgcttgccc
atgctgtcgctcaacaacgtgttttccgacatgcaggacagcgatccggccggccgccat
gccgagctggcagcgttcgaccagcgcgtgcgcgacgggctggggctggatgaagtcgaa
tacgccgtggagcccaagtttgacgggctggcggtcagcctggtgtacgagcacggcgtg
ctggtgcagggcgccacccgcggtgacggtgagaccggcgaaaacgtcaccgaaaacctg
cgcaccgtgcgctcgattcccctgcggctggaaaatgctcccggagacgacctgttcgcc
ccggccgttgttcctgcccgcttggaggtgcgcggcgaggtgctgatgctcaagcgggat
ttcgaacgcctgaacagcgaacaggatgccgccggactcaagcgttttgccaatccgcgc
aatgccgcggccggcagcctgcgacagctggattcgcgcatcactgccagccgccggctg
acgttttttgcctacgccgtggccgaagctgacggtgtcagcctgccggccacccattcg
gccacgatggactggctggccgggctggggctgccggtcagccgccagcgatcggtggtg
cgcgggctggccgggctgaccggtgcctatgaagccatgctggcgcagcgtgccggcctg
ccgttcgacatcgacggcgtggtgtacaaggtcaaccgcctgtcagaacaggcgcgcctt
ggattcgtgtcgcgggcaccgcggtttgcggtggcgcacaagttccccgccgaagaggcg
ctgacggtggtcgaggacattaccgtacaggtggggcgcaccggagcgatcacgccggtg
gcgcgcctgcagccggtatttgtcggcggcgtgaccgtgaccaacgccacgctgcacaac
gaagacgaagtccggcgcaaggacgtgcacgtgggcgataccgtcatcgtgcggcgggcc
ggtgacgtgatcccggaagtggtcagcgtgctggccgagcgccgccctccgcaggcgcgc
gccttcgagatgccgctcgtatgtccggtgtgcggctcgcacatcgtgcgcgaggcagac
gaagcggtggcgcgctgctcgggcgggctgtactgctcggcgcaacacaagcaggccttg
cagcactttgccagccgcaaggcgctggacgtcgaggggctgggagaaaaactggtcgac
cagctggtggatgccggactggtgcatacgccggccgatctctttgccctggaccagccg
gcgctggcacggctggaacgcatgggcgacaagagcgccgaaaacctggtgcgggcgctg
gatgcctgccgccacactacgctggcgcggtttgtctacgcgctgggtatccgcaatgtc
ggcgaggccactgcgcgtgatctcgccaggcatttcggtacactggacgcattgatggcc
gctgaccaggacatgctgatgacggcgccggacgtggggccgatcgtcgcccggtcgatc
gtggacttttttgccgaggcgcataaccgcgaggtcgtggatgccctgctggcagccggt
gtcagctggcctgtggtcgaaaccgtgacgagtgccggcgtggccggggtcagcggcaag
actttcgtgctgaccggcacgctgccgaccctgggccgcgatgatgccaaggcccggatc
gaggctgccggcggcaaggtgaccggcagcgtgtcgaaaaaaacccattacgtggttgcg
ggcgaagctgccggcagcaagctcgacaaggcgcacgagctgggcattaccgtactggac
gaggccgccctgctggccttgctggccggtaacgcctga
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