Paucilactobacillus hokkaidonensis: LOOC260_106180
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Entry
LOOC260_106180 CDS
T03598
Symbol
ligA
Name
(GenBank) DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lho
Paucilactobacillus hokkaidonensis
Pathway
lho03030
DNA replication
lho03410
Base excision repair
lho03420
Nucleotide excision repair
lho03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LOOC260_106180 (ligA)
03410 Base excision repair
LOOC260_106180 (ligA)
03420 Nucleotide excision repair
LOOC260_106180 (ligA)
03430 Mismatch repair
LOOC260_106180 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lho03032
]
LOOC260_106180 (ligA)
03400 DNA repair and recombination proteins [BR:
lho03400
]
LOOC260_106180 (ligA)
Enzymes [BR:
lho01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LOOC260_106180 (ligA)
DNA replication proteins [BR:
lho03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LOOC260_106180 (ligA)
DNA repair and recombination proteins [BR:
lho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LOOC260_106180 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LOOC260_106180 (ligA)
MMR (mismatch excision repair)
DNA ligase
LOOC260_106180 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LOOC260_106180 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
RNA_pol_A_CTD
Nlig-Ia
SHE3
Motif
Other DBs
NCBI-ProteinID:
BAP85175
UniProt:
A0A0A1GT90
LinkDB
All DBs
Position
634173..636203
Genome browser
AA seq
676 aa
AA seq
DB search
MDNQKPVEQLTIEEATHEVKSLSLQVEQWGREYYENDNPSVEDYVYDQAYQRLVSLEKAF
PELQSPDSPTQQVGAATISDFAKVEHPNPMLSMGDVFSVAELIEFNDRLQRNGVDHPEYN
LELKIDGLAVSLMYENGKFVQGSTRGDGRIGEDITKNLKKIKSIPRTLSQPLTIEVRGEC
YMPKEAFAKLNEQRELQGLTVFANPRNAAAGSLRQLDPQVTADRELSTFIYYVPDYQTLG
VTTQSAALLKLAELGFNVNLNNQVVDSQAEIEAYINEYTKKRNDLEYGIDGIVEKVNDLA
LQEELGSTVKVPRWEIAYKFPPEEAATIVRDIEWTVGRTGTVTPTAVMDAVLLAGTTVAR
ASLHNPDYLRQKDVRIGDTVYLHKAGDIIPEISTVELTKRSDGSVEYVIPTRCPECNSKL
VHLDEEVALRCINPMCPAQIKEGLAHFASRNAMNIDGLGPRILEQLFEREMIKDVADLYH
LTKTQLLTLDKFGDKSADNLLTAIDNSRHNSLERLLFGLGIRHVGAKAARLIAAQFKTIE
ALMMASSEEIAGVEAIGPIIGDSVVTYFNNTQVHELINELQAANVNTDYLGATQAVTDGP
LSGQKVVLTGKLIEMTRQEAQNWLESQGADVVGSVSKKTNLVIAGTDAGSKLTKAQSLGI
EVWNERQFQAAMKEDS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggacaatcaaaagccagtagagcaactaacaattgaagaagctacgcatgaagttaaa
tcgttgagcctacaagttgaacagtggggtcgggaatactatgaaaatgataatccaagc
gtggaagactacgtgtatgatcaggcttatcaacgattagtatctttggaaaaggctttt
ccagaattacaatcgcccgattcacccacgcaacaagttggtgcagcgacgatttcagac
tttgctaaagtagagcatcctaatccgatgttatccatgggtgatgtcttttcagtggct
gaattaattgagtttaatgaccggttgcaacgaaatggtgttgaccaccctgagtataat
ttggaactaaaaattgatggtttagcagtttcactaatgtatgaaaacggtaagtttgta
caaggatcaacccgtggggatggccgaattggtgaggacattaccaagaacctaaaaaaa
attaagtcaattccacggacattgtcgcaaccattaacaattgaggttcgtggagaatgt
tatatgcccaaagaggcatttgctaaattaaacgagcaacgggagttacagggcctgacc
gtgtttgctaatccgcgtaacgctgctgctggtagtttacggcagttagatccacaggtt
actgctgatcgggaattaagtacgttcatctattatgtacctgattaccagacacttgga
gtaacaacgcaaagtgcagcgttactaaaattagccgagttggggttcaatgttaactta
aataatcaagttgtcgattctcaagcggaaattgaagcttatatcaatgaatatacgaag
aaacgaaatgacctagagtatggtattgacggaattgttgaaaaagttaatgacttagca
ttacaagaagagcttggaagtactgttaaggtgcctcgatgggagattgcatataagttt
ccaccagaagaggctgctaccattgtgcgagatattgagtggactgttggccgaacgggg
acggtgacaccgactgctgtcatggatgcagtgctgttggcaggaacaactgtggcacgt
gcttcattgcataatcccgattatctacggcaaaaggatgttcgaattggtgacacagtt
tacttgcacaaagcgggtgacattattcctgaaatttcaacggtagaactgaccaaacga
agtgatggaagtgtcgaatatgttatcccaacgcgatgtccagaatgtaattcaaagtta
gttcatttagacgaagaagttgcattgcggtgtatcaacccaatgtgtcctgctcagatt
aaagagggcttggcgcattttgcttcacgcaatgccatgaatatcgatggcttgggtcct
agaattttggagcagcttttcgaacgtgaaatgattaaagatgtagccgatttatatcat
ctaactaaaacgcaattattaactttagataaatttggtgataaatcagccgataaccta
ttgacagctattgacaacagccggcataattcacttgaacgcctattattcggtttaggt
atccgacatgttggtgcgaaagctgcgcggttaatagcagctcaatttaaaacaattgag
gcattgatgatggctagtagtgaagagattgctggtgttgaggccattgggccaattatt
ggtgatagtgtagtaacgtattttaacaatacgcaggtgcatgaactgattaatgaattg
caggctgctaatgttaatacggattatcttggagcaacacaagcagtgacagacggcccg
ctgtctggacaaaaggttgttttaacaggaaaattaattgaaatgacgcgtcaagaagca
cagaattggctggaaagccagggtgcggatgttgttggtagtgtatcgaaaaaaactaat
ttagtcattgcaggtactgatgctggtagtaaattaacgaaggctcagtctttgggaatt
gaagtttggaatgaacggcagtttcaggctgcaatgaaggaggattcctaa
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