Lactobacillus helsingborgensis: DLD54_02645
Help
Entry
DLD54_02645 CDS
T06906
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lhs
Lactobacillus helsingborgensis
Pathway
lhs03030
DNA replication
lhs03410
Base excision repair
lhs03420
Nucleotide excision repair
lhs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lhs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DLD54_02645
03410 Base excision repair
DLD54_02645
03420 Nucleotide excision repair
DLD54_02645
03430 Mismatch repair
DLD54_02645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lhs03032
]
DLD54_02645
03400 DNA repair and recombination proteins [BR:
lhs03400
]
DLD54_02645
Enzymes [BR:
lhs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DLD54_02645
DNA replication proteins [BR:
lhs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DLD54_02645
DNA repair and recombination proteins [BR:
lhs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DLD54_02645
NER (nucleotide excision repair)
GGR (global genome repair) factors
DLD54_02645
MMR (mismatch excision repair)
DNA ligase
DLD54_02645
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DLD54_02645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AWN33110
LinkDB
All DBs
Position
524760..526775
Genome browser
AA seq
671 aa
AA seq
DB search
MADLTLDEARKEVAALRDKLDEWANAYYTKDTPEVEDNVYDKNYNRLVQLEQEFPQLVSQ
DSITQKVGGQIDNQFTKVTHEIPMLSMGDVFSKEELQEFDNRVRKQIGHEVAYNVELKID
GLSIALEYTDGKLTRASTRGNGQVGEDVTPNAKFISDIPQTLPEKLTTEVRGECYMGKEP
FAKLNAERDEKGESVFANPRNAAAGSLRQLDASITKHRHLSTFIYTWVNPPQEITSQHQA
IEKMTQLGFHTNQTGRRIAKMSEIFAFIDEYTAKRNSLDYGIDGIVLKVDDLNLQQDLGN
TVKVPRWEIAYKFPPEEQQTVVHEIKWTVGRTGVVTPTAIMDPVQLAGTTVSHAVLHNAD
LLQQKDVRIGDTVMLHKAGDIIPEISEVVLAKRPKDAQPYPIPTSCPSCGEKLIHLKDEV
ALRCVNPSCPAQIEEGITHFASRPAMNIDGLGPKIVRQLIKNDLVHNVADLYHLQAADLE
KLDHFKDKAISNLLNAINNSKSNSVELLLTGLGIDHVGAKAARLIAQKFKNMAKIMSADV
QEVASIATIGMTIAESLTTYFAQNEVVELVNELKASGVNMDYLGKSPEAAAADIPDNDFK
GKTVVLTGTLAHYTRSQFTQKLQSLGAKVTGSVSGKTDYVIYGQDAGSKFTKAQKLGVQL
LTEEEAIAKVK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggctgatttaactcttgatgaagccagaaaagaagttgctgcgctgagagataagttg
gacgaatgggccaacgcatattacacgaaggataccccagaggtagaagataatgtgtat
gacaaaaattataatcgcttagttcaattagagcaggaatttcctcagctggtgtcgcaa
gattccataacgcaaaaagttggtggacaaattgacaaccagttcaccaaagtaacgcat
gagattccaatgctttcaatgggcgacgtcttttctaaagaagaactccaagaatttgat
aatcgtgtgcgaaaacaaattggtcatgaagttgcttataatgtggaattaaaaatcgat
ggcttatcgattgcgttagaatacactgatggcaaattaactagggcatctactagaggt
aacggtcaagtcggtgaagatgttactcccaatgccaaatttatttcagatattccgcaa
accctaccagaaaaattgaccacagaagttcgtggtgagtgctatatgggtaaagagcct
tttgccaagcttaatgctgaacgcgacgaaaaaggtgaatcggtttttgccaacccccgt
aacgctgctgctggttctttacggcaactggatgcaagtattactaagcaccggcattta
agtacatttatttatacttgggttaatccaccgcaagaaatcacgagtcagcatcaggca
attgagaaaatgacccagctgggttttcatactaatcaaactggtcgaagaattgctaaa
atgtctgaaatcttcgcttttattgatgaatatacggcaaagagaaattctctggattat
ggtattgacgggatcgtcttaaaggttgatgatctgaatttacaacaagatttgggtaat
acggtcaaagtaccacgttgggaaatagcttataaatttccgccggaggagcagcaaaca
gtggttcatgaaattaagtggacagttggtcgtacaggtgtcgtaacgccaaccgcaatc
atggatccggtgcaacttgctggtacaactgtttcacatgctgttttgcataacgccgat
ttattacagcaaaaggatgttcgcattggggacaccgttatgttgcacaaagcgggcgat
attattcctgaaatttcagaagtagttttggctaaaagacctaaggatgcacaaccatat
cctattcctacttcttgtccatcatgtggtgaaaaattaattcacttaaaagatgaagtg
gcgctgcggtgtgttaatccttcttgcccagcacaaattgaggagggtattacccacttt
gcctccagacccgcaatgaatattgatggtttgggaccaaaaattgtcagacagttaatt
aaaaatgatctggtccataatgtagctgatttgtaccatttacaagctgcagacttggaa
aaattagatcatttcaaagacaaagcgattagcaacttattgaatgcgattaataattca
aagagtaattctgttgaattgctactgacgggattaggcattgatcatgttggcgccaaa
gctgctcgtttgatagcacaaaagtttaaaaatatggcaaagattatgtcagcagacgtg
caagaagtagcttcaatcgctacaataggcatgacaattgcagaatctttgactacctat
tttgcccaaaatgaagtggtggaattagttaacgaacttaaggccagtggggttaatatg
gattatttgggtaagagtcctgaagctgcagcggcagatattcctgataacgattttaaa
ggtaaaaccgttgttttgactggtactctggcacactataccagaagtcaatttactcag
aagttacaatcccttggcgcaaaagtaactggttctgtttctggtaaaactgattatgtt
atctatggtcaagatgctggttccaagtttacaaaagcacagaagctaggcgtgcaatta
ttgactgaagaagaagcgattgccaaagttaaataa
DBGET
integrated database retrieval system
