Linepithema humile (Argentine ant): 105677916
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Entry
105677916 CDS
T04898
Symbol
Smg6
Name
(RefSeq) telomerase-binding protein EST1A isoform X1
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105677916 (Smg6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhu03019
]
105677916 (Smg6)
03032 DNA replication proteins [BR:
lhu03032
]
105677916 (Smg6)
Messenger RNA biogenesis [BR:
lhu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
105677916 (Smg6)
mRNA cycle factors
Common to processing body (P body) and stress granule
105677916 (Smg6)
DNA replication proteins [BR:
lhu03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
105677916 (Smg6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
D1044-6_C
Motif
Other DBs
NCBI-GeneID:
105677916
NCBI-ProteinID:
XP_012232226
LinkDB
All DBs
Position
8:6653196..6739075
Genome browser
AA seq
1738 aa
AA seq
DB search
MSVRVKKVSIRLHAMHERLYFNMANRDKGRRKWGGFSQELMSSKVEKDRMAGMRGGGNRA
SQALYRPGSGPLRKSGRSSSVTDEYDNENGAQEKSRSTSIQNRLRQPQSNRSNQAQDSPP
LSQIDNVTEKLDNTHIDYRSSSNNESVQSIGQNSSGGGNDPKRKNRKPEQLLYVPKKVKE
AMEMDGSNRSPSRNVLEREREDSDDRDSHSNRSHKSDRNRPSFHSARDNNNEGRGREDNS
KRYSGNRRHRHANENEERWRFDSPVSAKNCANRKDNLREVRQGSEPLSVTNQNDFNRTRD
TRSVEPAGHPDKFQGKPPSGRRNNGKESLVKNTKLESLPPRLQKKYLIDNGYALPSNNPG
TSAEECWNGTSVVFQGSSSYNYPPAIQHSQTMQSLPPSGPLPPQSHWANTVPVRGRGRGR
LRPEDMDGTASGVFRPVTPEQYSAPSSRSHTPSQEYMNRSYDRRGSNSTMYTSMESLSRA
DSVMMPPPSSASPATSQSNSNKGHRSPESHRKGTLSPTNNRNTQRTIISNTHDHNSGLDK
QGNQSAMRHSFTKSDSFHPSSNTASENFDWSEEVELNEKLEQEHLSRSSSVLSIREGANM
PRSQAVGESHKRRKKKKRDKQRDTDRASSRDKGRGNSRERQKNQQNRENNNYNNQKNSNN
NNNSNRRYDHRRRSIIQRSRESSKERSYGSSYRNFDDLHRRRTDRYLDEDWRTGRKISIC
DSDDGRQTPKVSSHTAPLSSANSNSTAHRSSPTGYSNAQPGVLILPNDANQSPPNQTISA
SQQGAGQQQRTLFDPNNPHKPIVITSPGSRAAVQRDNDMQVSSVPVFQSNTSSHYSFQSA
QLDGMPPPYMNDQVGNTRPSWYDPYSPSFHSAKNHCLLLDIERADLELQWILSSGGFTSR
LERVSYIRHFLQLSLKILLETDIKFCQAENVEQHFWKILFYNLIEMLRKAMPKENSEGRE
HYKQIMLNIIDEGTTYLESLLTTLETTYEFKLDTFLASSSLPKGLGLLGLALVSAQKIFL
FLGDLARYKEQANETSNYGKSRQWYLKAQQINPKNGRPYNQLALLAHYARRKLDAVYYYM
RSLMASNPFHSARESLIALFDENRKKYLHYYESIERKRKEERESKERARMKEKEGANIIG
GGLRRETWIHPGDGRRVRRTTSEIIEARLSHTSDLEELSQLTSVEVNKRFVTSYLHVHGK
LITKIGMETFQEAGVQMLKEFRALLQHSPLPLPGTRLLQLLALNMFAIETTQLKDSQMEQ
GYRSEVQERALVVSLQMFSLILERGVSLLKAQLDSRQEPRLVVGEDLQVLLPAIKIWCDW
MLCHSTVWNPPPSCTDYRVGPPGDAWSRLATMVNLLEKLNYTRTTLIQGKDAEGREEELE
LVKLPEDITLAGFTPLMSNPQDPCYVEKTEDMEVAQVCLRISKILFFGQEFLCGLETPVL
KLQKSETGVSEYVSVVEASSASSPSSPPTQSDSELMVESYSEGEEESISTLRRLPSCGSM
PDDTTAPVAAVEIRSLIERKEELERRQRKQDRHRQRVQAILQKSSVSVEIEVRPRQLVPD
TNCFIDYLPQLQIIVRATASAQPIYTLMVPLVVLNELEGLARGADARDCPPASRATLNPE
HVARVAESAKAALAFARSRNPAIRCLTTRGTVLTSSTFTVEEDVDKDGLTRNDDRILTTC
LSLCRSSKDQTNAEEGQPRRLRREVVLLTEDRNLRVKALARDVPVREVPDFMQWAGLG
NT seq
5217 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtgcgtgtgaaaaaagtctcgatacgattgcatgcgatgcatgagcgattgtat
ttcaatatggcgaaccgcgacaaaggacgcagaaagtggggaggattttcacaagaactg
atgagttctaaggtagagaaagatagaatggcggggatgcgtggcggagggaatagagca
tcccaggccttatacagaccaggaagtggccctttacgtaagtcaggcagatccagtagc
gtcactgatgaatacgacaacgaaaacggcgcgcaagaaaaatccagatcaacctccatc
caaaatcgtttgagacagccacaatccaatcggtccaatcaagcacaggatagtccacct
ttatcacaaattgataatgtaacagaaaaactggacaatacccatattgactatagaagt
agcagcaacaatgaatccgtacagagcattggtcagaatagtagcggaggaggaaatgat
ccgaaaaggaaaaatagaaaacctgagcaattgttgtatgtaccgaaaaaagtaaaggaa
gcaatggagatggatggatcgaatagatctcccagtcgcaatgttttggaacgagagaga
gaagacagtgatgatcgtgactcccactccaatcgtagtcataaaagcgatcgtaaccgc
ccgagctttcacagtgcgcgagacaataacaatgaaggcagaggtagagaggacaacagt
aaacgatactcgggtaatcgccgacatcgtcacgccaacgagaacgaggagcgttggcga
ttcgattcgccagtgtcggctaaaaactgtgcgaatcgaaaggacaatctgcgcgaagtt
agacaaggctcggaacctttatctgtgaccaaccagaatgattttaatcgtacgagagac
acgcgcagtgtggaacctgctggacatccggataagtttcaagggaagccaccctcgggc
aggcgtaacaatgggaaagaaagtttggtgaaaaataccaagttagaatctctgccacca
cgattgcaaaagaaatatctcattgacaatggatatgcgttgcccagtaataatccggga
acgtccgcagaggagtgttggaatggtaccagtgttgtatttcagggatcatccagttac
aattatccaccagcgattcaacattcgcaaacgatgcaaagcttgccgccatccgggcct
ttaccgccacaatctcattgggcgaacaccgtaccggtgagaggcaggggaagaggtaga
ctcagacccgaggacatggatggtacagccagtggcgtttttagacctgtaactcctgaa
cagtactccgcgccgagctcaagatcccatacacccagccaggagtatatgaatcggtct
tacgatcgtcgcggtagtaacagcactatgtacaccagcatggaaagcttgagccgcgcc
gatagcgtaatgatgccgccgccatcgtccgcatcgcccgcaacgtcgcaatcgaattca
aataaaggccacaggtcacccgaaagtcatcgtaaaggcacactatcaccgaccaacaat
cgcaacacgcaaagaactataatcagcaatactcatgaccataattctggcctggataag
cagggcaatcaatcagccatgagacatagcttcacaaaaagcgattcatttcatccatca
tctaataccgcatctgaaaactttgactggagtgaagaggttgagttgaacgaaaaatta
gaacaggagcatctaagccgtagctcgtctgtattgagtattcgcgagggcgcaaatatg
ccgcgaagtcaggccgtaggcgagagtcacaagcgacgtaaaaagaaaaagcgcgataag
cagcgtgataccgatcgtgccagtagcagagacaaaggacgaggcaacagtcgcgagcgt
caaaagaaccagcagaatcgagagaacaacaactacaacaatcaaaagaatagtaataat
aacaataacagcaataggcggtacgatcacaggaggcgtagtattattcaacgtagccgg
gaatcgagtaaagaaagaagttacggtagcagttacagaaatttcgacgatctccataga
cgaagaaccgataggtacttagatgaagattggagaacgggcagaaagatatcgatttgc
gattcggacgacggaagacaaacccctaaagtttcctctcacacggcaccactttccagc
gcaaattcgaactcaaccgcgcatcgatcatctccaacgggatacagcaatgctcagccg
ggcgttttgatcttgcctaatgacgctaatcagtcgccgcccaatcaaacgatctcagct
tctcagcaaggagccgggcaacagcagagaacgctgttcgacccgaataacccgcataaa
cctattgttatcacctcacctggaagtagagcagctgtacaaagggacaacgatatgcaa
gtttctagcgttccggtattccagtctaatacatcgtcgcattattctttccaaagcgcc
caactagacggcatgccaccgccgtatatgaacgaccaagtcggaaatacgagaccttcg
tggtatgacccgtattcacccagttttcactcagcaaagaatcactgccttctcttggac
atagagcgcgccgatctggaattacaatggatattaagttccggtggctttacgtcgcgt
ttggaaagagtctcatacatacgacacttccttcaactgagcttgaaaatcttactggag
accgatatcaagttctgccaagcggagaacgtcgagcaacacttttggaagatattgttt
tataatttaatcgagatgttgcgaaaagcgatgcccaaagagaattcggaaggacgagag
cactacaagcagataatgttgaatatcattgacgagggcaccacttatctggaaagttta
ttgaccactcttgaaactacgtacgaattcaagttggacacatttcttgcgtcgtcgagc
ttacctaaaggtctcggacttttgggactggctttagtcagcgcgcaaaagatatttctg
ttcttgggagacttggcgagatacaaggagcaagcaaacgaaacgagtaactatggaaaa
tcgaggcaatggtatctcaaagcccagcaaatcaatcctaaaaatggcagaccttacaat
cagcttgccttactagcgcattatgcaagacggaaattggatgctgtatattattacatg
cgatctcttatggcgtccaatccgtttcactctgctagagaaagtctcatagcgctcttc
gacgaaaacagaaagaagtatctacattattacgagtctatcgaacgtaagcggaaggaa
gagagagaatcgaaggagcgggcaaggatgaaggagaaagaaggcgcgaacataatcggc
ggcgggctgagaagagagacgtggattcatccaggcgacggtagacgagtgcggcgtaca
acgagcgaaatcatcgaggccagactgtcccacacaagtgacttggaggaattatcgcaa
ttaacgagtgtcgaggtgaacaaacgattcgttacttcgtatctccacgttcacgggaag
ctcatcactaaaataggaatggaaacttttcaagaagctggcgttcaaatgctaaaggaa
ttcagagctctgttgcaacactcaccgctaccgcttcctggtactcgtctacttcaactc
ttggcgctcaacatgttcgcgatcgagaccacacagttgaaggattcccaaatggagcaa
ggctatcgatcggaggttcaggagcgagcgctcgtcgtatcactgcagatgttcagtctg
atcttggaacgcggtgtatcccttctgaaagctcagttagatagccgacaggaaccgagg
cttgtggtcggcgaggatctgcaagtgcttctacccgctattaagatttggtgcgactgg
atgctctgccacagcactgtctggaatccaccgccgtcttgcacggattacagagtcggg
ccgcctggagatgcatggagtagactggcgacaatggtgaatcttctagaaaaattaaat
tacaccaggacaaccttgattcaaggcaaggatgccgagggtcgcgaagaagaactggag
ctcgtcaaactgccggaagatatcacattggcggggttcactcctcttatgtcgaacccg
caggatccttgttatgttgaaaaaacggaagatatggaagtggctcaggtgtgcctcagg
ataagcaagatcctcttcttcggtcaagagttcttgtgcggcttggagacaccggtgcta
aaactgcagaagagtgagaccggcgttagcgaatatgtctctgtggtcgaagcctcgagc
gcaagttcaccgagctcgccgccgacacagagcgactcggagctcatggtggagagttac
agcgaaggagaggaggagtcgatttccacgttgagaagattaccctcgtgcggcagtatg
cccgacgatacgacggctcccgtggcggcggtcgagataaggtcgctgatcgagaggaag
gaggaactggagaggcggcagcggaaacaagatcggcatcgacagcgggtacaggcaatc
ttgcaaaagtcctcggtgtcggtggaaatcgaagtgagaccgagacaattggtgccggat
acgaactgcttcatcgattacctgccgcagctgcagatcatcgtgagggctactgccagc
gcgcaaccgatatacacacttatggtgccacttgtcgttctaaacgaacttgaaggtctg
gctcgaggcgccgacgccagggactgtcctccagcgtcgagggcgactttgaaccccgag
catgtggcacgagtggccgagagtgctaaggcagcattggccttcgcgaggagccgaaat
ccggcgatccggtgcttaaccacacgaggcaccgttctcacatccagcactttcacggtg
gaggaagacgtcgacaaggatggactgacgcggaacgatgataggatattaactacgtgc
ctcagcctttgcaggagcagcaaggatcagacgaacgcagaagagggacagccgcggcgt
ttgagacgagaggtggttctgcttacggaagaccggaacctcagggtaaaggctttggcc
agagacgtgcccgtaagggaagtgcccgactttatgcaatgggccgggctcggctga
DBGET
integrated database retrieval system
