Legionella israelensis: E4T55_02350
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Entry
E4T55_02350 CDS
T05938
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lib
Legionella israelensis
Pathway
lib03030
DNA replication
lib03410
Base excision repair
lib03420
Nucleotide excision repair
lib03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E4T55_02350 (ligA)
03410 Base excision repair
E4T55_02350 (ligA)
03420 Nucleotide excision repair
E4T55_02350 (ligA)
03430 Mismatch repair
E4T55_02350 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lib03032
]
E4T55_02350 (ligA)
03400 DNA repair and recombination proteins [BR:
lib03400
]
E4T55_02350 (ligA)
Enzymes [BR:
lib01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E4T55_02350 (ligA)
DNA replication proteins [BR:
lib03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E4T55_02350 (ligA)
DNA repair and recombination proteins [BR:
lib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E4T55_02350 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E4T55_02350 (ligA)
MMR (mismatch excision repair)
DNA ligase
E4T55_02350 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E4T55_02350 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RTT107_BRCT_5
RNA_pol_A_CTD
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QBS08801
LinkDB
All DBs
Position
complement(543934..545964)
Genome browser
AA seq
676 aa
AA seq
DB search
MNTNIKEKISILRNKIRLYDYHYYVKDEPLVPDAEYDRCFKELKQLESEYSQYATSDSPT
QRVGATPSDAFETVAHKQPMLSLSNVFSDDELKAFIKRIVDRLDYAGDEIEFACEPKLDG
LAVNMTYENGRLKYAATRGDGAVGEKITANIKTISSIPLKLMSDNSPKIIEVRGEVYMPI
AGFESYNQKARERGEKTFANPRNAAAGSLRHLDPSVTATRPLEMYCYGIGACEGYELPDT
HFEQLKLLKTFGFRVPPNIKLVKGLEGCRQYYDEMLSKRSSLSFEIDGVVYKVNRIGLQQ
DLGFVSRAPRFACAHKFPAVEELTTLLAVDWQVGRTGALTPVARLEPVTVAGVTVSNATL
HNMDEIKRKDIRIGDKVVVRRAGDVIPEVVSVVLEQRPDKTETILLPSHCPVCGSEVLRE
EDEAVARCVGGLFCKAQLKRMMWHFASRKAMDIDGLGSGLIELLVDEGIIHHLPDLYELD
FNELVNLPRMGKKSAQNLLNALENSKKTTFNRFLYALGIREIGETSARILASEFKDIEHL
KKASMDELTALKDIGPVASAHVVHFFAQPHNVEMINKLLELGITWPKPEKKAINQEHPLF
GKVVVLTGSLSGLSREEAKTKLREVGAKVTGSVSKNTDFLIAGSDAGSKLTKANDLGVKV
IDESEFLNMISTQNLV
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaaacattaaagaaaaaatttcaatattaagaaacaaaatccgtctttacgat
taccactattacgtaaaggatgaacccttggtgccggatgcggaatatgatcgctgtttt
aaggaattgaagcagcttgaatctgagtactcgcaatatgctaccagcgactctcccaca
caaagagtaggcgcaacgccatcagacgcttttgaaacggtagctcacaaacaacccatg
ctttcattgtccaatgtgttttcagatgatgaattaaaagcctttatcaaacgtatcgtt
gatcggcttgattacgcgggtgatgagattgagtttgcttgcgagcccaaacttgatggg
cttgccgtaaatatgacttatgaaaatggcagattaaaatatgcggccacaagaggggat
ggggctgtgggggaaaaaattacagccaatataaaaacgatttcctccataccgttaaaa
cttatgtctgataattctccaaagatcattgaagtgaggggtgaagtatacatgccaatc
gccggatttgaatcttataatcaaaaagccagagaacgtggtgaaaagacttttgctaat
ccgcgcaatgctgctgcaggcagtttgcgccatttagacccttctgtcacagctacaaga
cctttagagatgtattgttatggtatcggcgcctgtgaaggctatgaacttcctgatact
cattttgaacaacttaagttgttaaaaacatttggctttagggtgcctccaaacataaaa
ctggtaaaaggtcttgagggctgccgacagtattatgatgaaatgctctcaaaacgttca
tctctttcttttgaaatcgatggggtagtttataaagtcaaccgcattgggcttcaacag
gatctcggctttgtttcacgtgctccaagatttgcttgcgctcataaatttccagcggtt
gaagagttaacgaccttattggccgtagactggcaggtggggcgtacgggcgcattaaca
cctgtagcccgtttagagcctgtgactgtggctggtgtgaccgtcagtaacgccacattg
cataacatggatgaaattaaacgtaaggatattcgcattggcgacaaagtcgttgtgcgt
cgtgcgggcgatgtgattcccgaggtggtgtctgtggttttggaacagcgtcccgataaa
acagagactattctcttaccctctcattgcccggtttgtggttcggaggttctcagagaa
gaagacgaggctgtagctcgttgtgtaggtggtttattctgtaaagcacaattaaagcga
atgatgtggcattttgcttcccgcaaggcaatggatattgatggcctcggcagtggcctg
attgagctcttggttgatgaaggtattatccatcatttacctgatctatacgagttggac
tttaatgagctggtgaatttgcccaggatgggcaaaaagtccgcacaaaatttgttaaat
gcacttgagaacagcaaaaaaaccactttcaatcgatttctttatgccctgggtattcga
gaaattggcgaaaccagcgcccgcattttagcgtcagagtttaaggatatagaacactta
aaaaaagcctcaatggatgaactgactgctttgaaagatattggtcctgtggcttcagct
cacgttgtgcatttttttgctcaacctcacaatgttgagatgatcaataaattgttggag
ttagggataacctggccaaaacctgaaaaaaaagcaataaatcaagagcatcctttattt
gggaaagtggttgtgctgacgggaagtttgtccggattatcgcgtgaagaagccaaaaca
aagttgcgagaggtgggagcgaaagtcacagggagcgtatctaaaaatacagattttctt
atagcaggcagtgatgcgggctccaaactcactaaagcaaacgacttaggggttaaagtg
attgatgagagtgagtttcttaacatgataagtacacagaacctagtctaa
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integrated database retrieval system
