Lactobacillus iners: GYK47_00485
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Entry
GYK47_00485 CDS
T08045
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lid
Lactobacillus iners
Pathway
lid03030
DNA replication
lid03410
Base excision repair
lid03420
Nucleotide excision repair
lid03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GYK47_00485 (ligA)
03410 Base excision repair
GYK47_00485 (ligA)
03420 Nucleotide excision repair
GYK47_00485 (ligA)
03430 Mismatch repair
GYK47_00485 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lid03032
]
GYK47_00485 (ligA)
03400 DNA repair and recombination proteins [BR:
lid03400
]
GYK47_00485 (ligA)
Enzymes [BR:
lid01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GYK47_00485 (ligA)
DNA replication proteins [BR:
lid03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GYK47_00485 (ligA)
DNA repair and recombination proteins [BR:
lid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GYK47_00485 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GYK47_00485 (ligA)
MMR (mismatch excision repair)
DNA ligase
GYK47_00485 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GYK47_00485 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
HHH_3
bCoV_SUD_C
Motif
Other DBs
NCBI-ProteinID:
QIC18150
LinkDB
All DBs
Position
99614..101632
Genome browser
AA seq
672 aa
AA seq
DB search
MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLIDP
DSITQRVGGNTKSDLAKVVHEQPMLSMGDVFSKDELLEFDQRIQKMVGHVVDYNVELKID
GLSLSLEYKAGKLVRASTRGNGHIGEDVTANAMHIEDIPKFLPQKIDIEVRGECYMDKAT
FAKLNFERDDQGLAIFANPRNAAAGSLRQLDANVTKKRQLSTFIYTWVNPPETITSQHQA
ILTMAELGFHTNTTGCKLSSINEVFDFIDKYTNQRSELTYGIDGIVLKVDDLALQAKLGN
TVKIPRWEIAYKFPPEEQETVVQNIVWTVGRTGVVTPTAVMDPVNLAGTVVSRAVLHNPD
LLRQKDIRLGDTVLLHKAGDIIPEISQVVLNKRPQASLPYEIPKICPSCNQNLVHLKDEV
ALRCINPMCPAQVEEGITHFASRQAMNIVGLGPKIVRQLIALHLVNDIADLYFLSATQLA
KLDHFKEKSIQNLLNAIENSKQNSVELLLFGLGIDHVGAKAARLIAKKFHDLNTIRECSI
ADLMQIDTIGQTIAESMVKYFEQQSVKALMDQLQIAGVNFKYLGASDTQSIEDNFFKGKN
VVLTGKLAHYSRADLTKKLTMLGAKVMSSVSKNTDYLIYGDAAGSKKTRAQQLEIPMLTE
DEVIAKLNSQKE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaattatcgttagcacaagctaagttagaagtacttaaattacgcaaacaatta
gatagttgggcatatgcatattatgtccaagatgcaccagtagtagaagataatatttat
gatcaggtttatcaacagttattagagttggaacaaaagtatcctgttttgatagatcct
gattctattacacaacgagttggtggaaacactaaatcagatttggctaaagtcgttcat
gagcaaccaatgctttctatgggggatgttttttctaaagatgagttacttgaattcgat
caaaggatccaaaaaatggttggtcatgtagttgactacaatgtagaattgaaaattgat
ggactatctttaagtttagaatataaagcaggcaagcttgtgcgggcttctactcgagga
aatgggcatatcggtgaggatgttactgctaatgctatgcatattgaagatattcctaag
tttttgccacaaaaaatagatattgaggttcgtggtgaatgctatatggataaagctact
tttgccaaattaaattttgagcgagatgatcaaggtttagctatttttgctaatccacgt
aatgctgctgctggatcgttgcgccaattggatgctaatgtaactaagaaacgacaacta
agtacttttatatatacatgggttaatccgccagagacgattactagtcagcaccaagca
attttgaccatggctgaattgggttttcatactaataccactggatgtaagctatcttca
attaatgaggtttttgattttatcgataaatatactaatcagcgtagtgaattgacttat
ggtattgatggtatcgttttaaaggtagatgatttagcattacaagccaaattaggaaat
acagtaaaaataccaagatgggagattgcctataaatttccaccagaagagcaagaaact
gttgtacaaaatattgtatggacagtgggtcgtacaggagtagtaacgcccaccgctgtg
atggatccagttaatttagctggtacggtcgtaagtcgagctgtattacataatcctgat
ttactaaggcaaaaggatatccgattaggtgatactgttttattacataaagctggcgat
attattcctgagatttcacaagttgttttaaataaaagaccgcaagctagtctaccatat
gagataccaaaaatatgtccatcttgcaaccaaaatttagttcatttaaaagatgaagtt
gctttacgttgtatcaatcctatgtgtcctgctcaagttgaagaggggattacacatttt
gcatcaagacaggcaatgaatattgtgggtttaggtcctaaaattgtacgtcaattaata
gcattgcatttagttaatgatattgcagatttatattttctttctgccactcaattggct
aagttagatcattttaaagagaaatctattcaaaatttattaaatgcgattgaaaatagt
aaacaaaattcggtagaattattactttttggcttaggtatcgatcatgttggagctaaa
gctgcacgattaatagctaaaaaatttcatgatttgaatacaatcagagagtgttctatt
gcagacttgatgcaaattgatactattgggcagactattgctgaatcgatggttaaatat
tttgaacagcaatcggttaaagcactgatggatcaactgcaaattgctggagttaatttt
aaatatttaggagcaagtgacacccaatcgattgaagataacttcttcaagggaaaaaat
gtggtattaactggtaaactagctcattattcaagagctgatttaacgaaaaaactaaca
atgttaggtgctaaagttatgagttcagtttctaagaatactgattatttaatatatggg
gatgctgcaggttctaagaaaactagggcacagcagttagagattccaatgttaacagaa
gatgaagttatagctaaattaaatagtcaaaaggagtag
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