Listeria ivanovii subsp. ivanovii WSLC 3010: JL52_09170
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Entry
JL52_09170 CDS
T03400
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lii
Listeria ivanovii subsp. ivanovii WSLC 3010
Pathway
lii03030
DNA replication
lii03410
Base excision repair
lii03420
Nucleotide excision repair
lii03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JL52_09170 (ligA)
03410 Base excision repair
JL52_09170 (ligA)
03420 Nucleotide excision repair
JL52_09170 (ligA)
03430 Mismatch repair
JL52_09170 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lii03032
]
JL52_09170 (ligA)
03400 DNA repair and recombination proteins [BR:
lii03400
]
JL52_09170 (ligA)
Enzymes [BR:
lii01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JL52_09170 (ligA)
DNA replication proteins [BR:
lii03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JL52_09170 (ligA)
DNA repair and recombination proteins [BR:
lii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JL52_09170 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JL52_09170 (ligA)
MMR (mismatch excision repair)
DNA ligase
JL52_09170 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JL52_09170 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
AIS66712
LinkDB
All DBs
Position
complement(1884020..1886035)
Genome browser
AA seq
671 aa
AA seq
DB search
MADKKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLQIEEAHPEWVTPESPSNR
VGGEVLEGFQKVAHDTPMLSLANAFNKEDLADFDRRIRDKVGEDIAYMCELKIDGLAVSL
QYDNGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYSIEVRGEAFMPKRSFQKLNE
IREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVTTHSDGLDMLE
TLGLKVNKERRLCANLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNDLEQQRQMGTTAKSP
RWSIAYKFPAEEVPTKLLDIELNIGRTGVVTPTAVLEPVRVAGTTVSRASLHNEDLITEK
DIRIGDTVLIKKAGDIIPEVIKSITEERTGDEEPFHMPKNCPTCESELVRLEEEVALRCI
NPKCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFTHHLIKDVADLFFLSKEKLLELERM
GEKSVTNLLASIEQSKQNSLEKLLFGLGIRHVGAKAAKSLAIHFETMDNLKIADKETLTS
INDIGEKMADSIVTYFANEEVHDLLDELKRANVNMTYTGPKLEDMSEEELVFAGKTVVLT
GKLEQLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLI
EYLPDEGGLDK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaaacggtatgaagagcttattaacatacttgatcagtacagctatgat
tattatgtaattgataacccaacagtagaagatgccgaatacgatcaaaaaatgcaagaa
ttacttcaaatagaagaggcgcatccggaatgggttacacctgaatctccgtccaatcga
gttggcggggaagtgttagaagggtttcaaaaagtagcacatgacacgccgatgttaagt
cttgcgaatgcatttaataaagaggacctagctgattttgatcgtcgtattcgagacaaa
gtaggtgaagatatcgcttatatgtgcgaactgaaaattgatggtcttgcagtatcactt
caatatgataatggtaaatataaacaaggtgcgacacgcggtgacggcacgattggcgaa
gatattaccgccaacttacggacgattcgttccattccaatgaaattacaaaaagattat
tccattgaagtacgtggcgaggctttcatgccaaaacgctctttccaaaaactaaatgaa
attcgcgaagaagaaggccagatgctgttcgcaaatccgcgaaatgcagcggccggatca
ctgcgccaattagatacaaaaattgccgcatcaagaaatttagatatcttcctatatgcc
gtagccgattttggtgaaatgggtgttacaactcatagcgacggccttgatatgcttgaa
acacttggtttaaaagtgaacaaagagcgcagactttgtgctaatttggaggaagtttac
gcttatattgatgagtggactgaaaaaagagcgggcttagcgtatgatattgatggtatt
gttttgaaactaaatgatttagagcaacagcgtcaaatgggaacaaccgctaaatcacca
cgctggtctatcgcctataagtttccagcagaagaagtaccaaccaaattacttgatatt
gaactaaatattggtagaacgggtgtggtaactcccactgctgtgttagaaccagtacga
gtagcaggaacaacggttagccgggcttctcttcataacgaagacctcataaccgaaaaa
gatattcggattggcgataccgttttaataaaaaaagcaggggacatcattccagaagtt
attaaaagtattaccgaagaaagaactggtgatgaagaacctttccacatgccaaaaaac
tgtcccacttgtgagagcgaacttgttcgtttagaagaagaagtggcgctcagatgtatc
aatccgaaatgcccagcgcaaatcaaagaaggcttaattcactttgtttctcgaaatgca
atgaatattgatggactcggtgaaaaagtaataattcaactgtttacacaccatttaatt
aaagatgtagcagatttgtttttcctttcgaaagagaaactgttagaattagaaagaatg
ggagaaaagtcagtaaccaatttactcgcatcaattgaacaaagtaaacaaaactcacta
gaaaaattattatttggcttaggaattcgtcatgtcggcgctaaagcagccaaatcactt
gcgattcactttgaaaccatggataatttgaaaatagccgataaagaaacattaacaagt
attaatgatatcggcgaaaaaatggcagacagcatcgtcacctactttgcgaatgaagaa
gttcatgacttactagatgaattaaaaagggctaacgtgaatatgacttatacaggacca
aagctagaagatatgtccgaagaagaacttgtttttgcagggaaaacagtggttctaact
gggaaattagaacagttaacaagaaacgatgcaaaagccttaatcgagtcacttggcggg
aatgtttctgggagcgtcagtaaaaagacggatgttgttgtagctggcagtgatgctggt
tctaaactcgctaaagcagaagaactagcaattcctatttggtccgagaatgacttaata
gagtacttaccagacgaaggtggattagacaaatga
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