Limnohabitans sp. INBF002: LINBF2_12860
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Entry
LINBF2_12860 CDS
T09962
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
limi
Limnohabitans sp. INBF002
Pathway
limi03030
DNA replication
limi03410
Base excision repair
limi03420
Nucleotide excision repair
limi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
limi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LINBF2_12860 (ligA)
03410 Base excision repair
LINBF2_12860 (ligA)
03420 Nucleotide excision repair
LINBF2_12860 (ligA)
03430 Mismatch repair
LINBF2_12860 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
limi03032
]
LINBF2_12860 (ligA)
03400 DNA repair and recombination proteins [BR:
limi03400
]
LINBF2_12860 (ligA)
Enzymes [BR:
limi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LINBF2_12860 (ligA)
DNA replication proteins [BR:
limi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LINBF2_12860 (ligA)
DNA repair and recombination proteins [BR:
limi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LINBF2_12860 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LINBF2_12860 (ligA)
MMR (mismatch excision repair)
DNA ligase
LINBF2_12860 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LINBF2_12860 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
DUF4796_N
Zn_Ribbon_TF
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BDU53051
LinkDB
All DBs
Position
complement(1288524..1290677)
Genome browser
AA seq
717 aa
AA seq
DB search
MSTADLFGSDANAHVGGSAANPTDGSNANGHNDVAARAAKLRTQLHHHGHQYYVLDAPVI
PDAEYDRLFKELQALEAAHPELLTPDSPTQRVGGKPLDSFASVKHVVPMLSIRTETDTEA
SGAEAFDTRIRKELGLTEADPLVDYVAELKFDGLAMSLRYENGVLVQAATRGDGETGEDV
TQNIRTIGQIPLRLSHDAPKVLEVRGEVYMARGDFEALNERQRERIAAGEKGEKTFVNPR
NAAAGAVRQLDPTIAAQRPLSFFAYGLGDITPAEEGGPSFSTHFDLLMTLKKWGFPVAEQ
TACVQGAAGLVAFHQRIGQARDALPYDIDGVVYKVNSLAAQRQLGFVTREPRWAVAHKYP
AQEQLTTVQAIEVQVGRTGKLTPVAKLAPVFVGGVTVTNATLHNEDEARRKDVRVGDTVV
VRRAGDVIPEVVSVIVEKRLHESQIFTMPHICPVCGSAAVREEGEADYRCTGGLFCSAQR
KQAILHFAHRRAVEIEDLGDKLVDQLVDAGVVKTLPDLYRLGLTALVTLERMAEKSANNV
LASIEKSKHTTLPRFLFGLGIRHVGEATAKELARHFGKMDAIMDATLDQLLQVADVGPIV
AQSLRTFFDQPHNREVVEQLRACGVTWTEGEPTEGASLPLAGQTFVLTGTLPTLSRDQAK
DMLEALGAKVAGSVSKKTHCVVAGAEAGSKLDKAQELGIKVLDEAGLLALVAEHASE
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgctgacttatttggcagcgatgccaacgcccatgtaggcggctctgccgct
aaccccacagacggcagcaatgccaacggccacaacgatgtagcggcacgtgccgccaaa
ctgcgcacacagctgcaccaccacggccaccagtactacgtgctggacgcgcccgtcatt
cccgatgccgaatacgaccgcttgttcaaagagctgcaagcgttagaagcagcgcacccc
gagctcctcacccctgattcacccacgcaacgtgtgggtggtaaaccactcgatagcttt
gccagcgtcaaacacgtggtgcccatgctcagcattcgcaccgagaccgacaccgaagcc
agcggcgccgaagcctttgacacgcgcattcgtaaagagctgggcctgactgaggccgac
ccgttggtggattacgtggccgagttgaaatttgacggcttggccatgagcctgcgctac
gagaacggtgtgttggtccaagccgccacacgcggcgatggcgaaaccggtgaagacgtc
acacaaaacatccgcaccattggccaaatccctctgcgcttgtctcacgacgcgcccaaa
gtgctggaagtgcgcggcgaggtctatatggcccgtggcgactttgaagccttgaacgag
cgccaacgcgagcgcattgccgcaggcgagaagggcgaaaaaacctttgtgaacccacgc
aacgccgccgctggtgccgtgcgtcagcttgaccccaccattgccgctcagcgccccttg
agcttctttgcttatggcttgggcgatatcacacctgccgaagaaggcggcccatccttc
agcacgcatttcgatttgttgatgacgctcaagaaatggggcttccccgtggccgagcaa
accgcatgtgtgcaaggcgcggcgggcttggtggcgtttcatcaacgcatcggccaagcg
cgtgatgcgttgccgtacgacattgacggcgtggtctacaaggtcaacagcctggccgcg
cagcgtcagcttgggtttgtgacgcgcgaaccccgctgggccgtggcgcacaaatacccc
gcgcaagaacaactcaccaccgtgcaagccatcgaggtgcaagtgggccgcacgggcaag
ctcacacccgtggccaaactcgcgcctgtgtttgtgggcggcgtgaccgtgaccaacgcc
acgctgcacaacgaagacgaagcccgtcgcaaagacgtgcgggtaggcgacaccgtggtg
gtgcgccgcgcaggcgatgtgattcccgaagtggtgtcggtcatcgttgaaaaacgtttg
catgaatcccaaatcttcaccatgccgcacatttgccctgtgtgcggcagcgccgccgtg
cgcgaagagggcgaggctgactaccgctgcacgggcggcctgttttgcagcgctcagcgc
aagcaagccatcctgcactttgcacaccgccgcgccgttgagattgaagatttgggcgac
aagttggtggatcaactggtggatgctggcgtggtcaaaaccttgcccgacctgtatcgc
ttggggctaaccgccttggtcacgctggaacgcatggctgaaaaatcagccaacaacgtg
ctggccagcattgaaaaatccaaacacaccacgctgccacgcttcttgtttggcctaggc
attcgccatgtgggcgaggccacggccaaagagctggcacgtcacttcggcaagatggac
gccatcatggacgccacgctggaccagctgctgcaagtggctgacgtgggacccatcgtg
gcgcaaagcctgcgcactttctttgaccagccgcacaaccgcgaagtggtggagcagctg
cgcgcgtgcggtgtcacatggaccgagggcgaacccacagaaggcgcgagcttgccgctg
gcgggccaaacctttgtgctcaccggcacactgcccaccctcagtcgcgaccaagccaaa
gacatgctcgaagccttaggagccaaagtggcaggtagtgtgagcaaaaaaacgcactgc
gtggtggctggtgcagaggccggcagcaagctcgacaaagcgcaagagctgggcatcaag
gtgctggacgaagcgggcttgttggctttggtcgctgaacacgcatctgaataa
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