Limnobacter profundi: HKT17_07880
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Entry
HKT17_07880 CDS
T06583
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
limn
Limnobacter profundi
Pathway
limn03030
DNA replication
limn03410
Base excision repair
limn03420
Nucleotide excision repair
limn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
limn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HKT17_07880 (ligA)
03410 Base excision repair
HKT17_07880 (ligA)
03420 Nucleotide excision repair
HKT17_07880 (ligA)
03430 Mismatch repair
HKT17_07880 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
limn03032
]
HKT17_07880 (ligA)
03400 DNA repair and recombination proteins [BR:
limn03400
]
HKT17_07880 (ligA)
Enzymes [BR:
limn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HKT17_07880 (ligA)
DNA replication proteins [BR:
limn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HKT17_07880 (ligA)
DNA repair and recombination proteins [BR:
limn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HKT17_07880 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HKT17_07880 (ligA)
MMR (mismatch excision repair)
DNA ligase
HKT17_07880 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HKT17_07880 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
Prot_ATP_ID_OB_C
ETO1_N
Motif
Other DBs
NCBI-ProteinID:
QJR29637
UniProt:
A0ABX6N5H1
LinkDB
All DBs
Position
complement(1683165..1685237)
Genome browser
AA seq
690 aa
AA seq
DB search
MTNLDLFDSNGSGDKSDEQDESPSAAIRRLIELLNRWEHAYYVLDAPEVPDSEYDRVYQA
LQQLENSHPDLIQSDSPTQRVGGKPADGFEQVKHRVPMLSLGNAFDDSDVLAFDRRVKEL
ADLPIDTTIAYAVDPKFDGLAISIHYKNGIFQQAITRGDGTVGEDVSTNVKTIRSLPLKL
KGSKVPEHLEVRGEIFMFKKDFAQMNERQAELGLKVFANPRNAAAGTIRQLDPKIAASRP
LRFYCYGAALERDQLRELKSQSAMMQWLSGMGLPVSELSQTALGAEGLLTFYRSVGERRS
TLPFEIDGVVYKVDSFDLQDQLGYVAKAPRFAVAHKFPPDEVLSRLLNIEVQVGRTGSIT
PVAKLEPVKVGGVVVSSATLHNLDEIQRKDLRVGDQVLVRRAGDVIPEVLPFPGNQRSAG
SCAFVMPTHCPICNSLVQKEEGEAAFRCTGGLVCKAQLTQSIIHFAHRRAIDIEGLGSKL
VEVLVDKEWVKTPADLFRLEFDALVQLERMGEKSVRNLLDSIEKAKQTTFGRFLFGLGIR
HVGEATARDLAAYFKNVDRLMSATIEELLEVNDVGPVVAESIRQFFDEPANQQVVRELIS
LGLAWTTEDTQTADESHPFFGKTFVLTGTLGHYSRDEAGALIIARGGKVTGSVSKKTDYL
LAGEAAGSKLDKAAALGVTVLDESTFQGML
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgaccaatctggatttgtttgacagtaacggcagtggcgacaaatccgatgagcaggac
gagtctccaagcgcggcaattcgccgcctgattgaactgctgaaccgctgggaacatgcc
tactatgtgctggatgcacctgaagtgccggactccgaatatgaccgggtctatcaggca
cttcaacaactcgaaaacagccaccccgacctgattcagagtgactcccccacacaacgc
gttggtggcaaacccgcggatggcttcgagcaggttaagcaccgcgtacccatgctgtcg
cttggcaatgcctttgatgacagcgacgtgcttgccttcgatcgacgggtcaaggaactg
gccgacctgccgatagacaccacaattgcttacgcggttgatccaaaatttgacggattg
gccatctcaattcattacaaaaacggcattttccaacaagcgattactcgcggcgacggc
acggttggtgaagacgtatctaccaatgtaaaaaccattcgaagcttgcccttgaaatta
aagggaagcaaggtgcctgagcatttggaagtgcgtggcgaaattttcatgttcaagaaa
gatttcgcacagatgaatgagaggcaagcggaacttggcctgaaagtttttgcaaatcca
cgcaatgctgcagctggcaccattcgccaactcgaccccaaaatagctgcaagtcgaccg
ctgcggttttactgctatggtgcggcccttgaacgggatcagttgcgtgaactaaaaagt
caatccgccatgatgcaatggctgtctggaatgggcctgcctgtttcagaacttagccaa
accgccttgggtgccgagggcctcttgaccttctaccgcagcgtgggcgagcgccgcagc
acattgccttttgaaattgacggcgtagtttacaaggtagattcttttgaccttcaagat
caacttggttacgtggccaaagcgccgcgttttgcagtggcccacaaatttccgcccgat
gaagtgctcagccgcctgctgaatattgaagtacaagtgggccgtacagggtcgattaca
ccggttgcaaaacttgaacccgtgaaagtgggtggtgttgttgtatcgtctgccaccctg
cacaatcttgatgaaattcaacgcaaggatttgcgggtaggtgaccaggttttggttcgc
cgtgccggcgatgtaattcccgaggtgttgcctttcccgggcaaccagcgcagcgcagga
agctgcgcctttgtcatgccgacacactgcccaatttgtaattcactggttcaaaaagaa
gagggcgaagctgctttccggtgtacaggcggcttggtgtgcaaagcccagcttacgcag
tcgattattcattttgcgcatcgacgtgccatcgacattgagggcctgggtagcaaactg
gttgaagtactggttgacaaggaatgggtaaaaacccccgcagacctgtttcgcctcgaa
tttgatgccttggttcagcttgagcgcatgggagaaaaatcggtgcgcaacctgctggac
agcatcgaaaaggccaagcaaaccacatttggcagatttttgttcggcttgggaatacgg
catgttggcgaggctaccgcccgtgatttggcggcctatttcaagaatgtggatcggctg
atgagcgccacaattgaagaactgcttgaggtcaacgatgtcggccctgtggtggcggaa
tccatacggcaattttttgatgaacctgccaatcaacaggttgtacgcgaattaatctca
ctgggacttgcctggacaaccgaagacacgcaaacagctgatgaatcgcatcctttcttt
ggaaaaacatttgtgctcaccggcacgcttggccactacagccgggatgaagctggcgca
ttgatcatcgctcgtggcggtaaagtaactggctcggtgtccaaaaagacagattacttg
ttggccggggaggctgctggcagcaaactggacaaggccgcagccttgggcgtaactgta
cttgatgaaagtacatttcaaggtatgctttaa
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