Listeria ivanovii subsp. londoniensis WSLC 30151: JL53_09805
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Entry
JL53_09805 CDS
T03402
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lio
Listeria ivanovii subsp. londoniensis WSLC 30151
Pathway
lio03030
DNA replication
lio03410
Base excision repair
lio03420
Nucleotide excision repair
lio03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JL53_09805 (ligA)
03410 Base excision repair
JL53_09805 (ligA)
03420 Nucleotide excision repair
JL53_09805 (ligA)
03430 Mismatch repair
JL53_09805 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lio03032
]
JL53_09805 (ligA)
03400 DNA repair and recombination proteins [BR:
lio03400
]
JL53_09805 (ligA)
Enzymes [BR:
lio01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JL53_09805 (ligA)
DNA replication proteins [BR:
lio03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JL53_09805 (ligA)
DNA repair and recombination proteins [BR:
lio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JL53_09805 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JL53_09805 (ligA)
MMR (mismatch excision repair)
DNA ligase
JL53_09805 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JL53_09805 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Zn_ribbon_NUD
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
AIS64025
UniProt:
A0ABS1G645
LinkDB
All DBs
Position
complement(2002900..2004915)
Genome browser
AA seq
671 aa
AA seq
DB search
MADKKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLQIEAAHPEWVTPESPSNR
VGGEVLEGFQKVAHDTPMLSLANAFNKDDLADFDRRIRDKVGEDVAYMCELKIDGLAVSL
QYENGKYKQGATRGDGTTGEDITANLRTIRSIPMKLQKSYSIEVRGEAFMPKRSFQKLNE
IREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVTTHSAGLAMLE
TLGLKVNKERRLCSTLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNDLEQQRQMGTTAKSP
RWSIAYKFPAEEVPTKLLDIELNVGRTGVVTPTAVLEPVRVAGTTVGRASLHNEDLITEK
DIRIGDTVLIKKAGDIIPEVIKSIAEERTGDEEPFHMPANCPTCGSELVRLEEEVALRCI
NPKCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFTHHLIKDVADLFFLSKEKLLELERM
GEKSVTNLLASIEQSKQNSLEKLLFGLGIRHVGAKAAKSLAIYFETMDKLKLADKETLTR
INDIGEKMADSIVTYFANEEVHNLLDELKRAGVNMTYTGPKLDDMSEEELVFAGKTVVLT
GKLEQLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLI
EYLPDEGGLNK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaaacggtatgaagagctcattaacatacttgatcagtacagctatgat
tattatgtaattgataacccaacagtagaagatgccgaatacgatcaaaaaatgcaggaa
ctacttcaaatcgaagcagcgcatccggaatgggttacacctgaatctccgtccaatcga
gttggtggggaagtgttagaagggtttcaaaaagtagcgcatgacacgccgatgttaagt
cttgcgaatgcatttaataaagatgacctagctgattttgatcggcgtatccgagataaa
gtaggcgaagatgtcgcttatatgtgtgaactgaaaattgatgggcttgctgtatcactt
caatatgagaatgggaaatacaaacaaggtgcgacacgcggcgacggaacgactggcgaa
gatattaccgccaacttgcggacgattcgctctattccaatgaaattacaaaaaagttat
tccattgaagtacgtggcgaggctttcatgccaaaacgctctttccaaaaactcaatgaa
atccgtgaagaagaaggtcagatgctatttgccaatccgcgaaacgcagcagcaggatcg
cttcgccaattagatacgaaaattgctgcatcaagaaacttagacattttcctatatgct
gtagcagactttggcgaaatgggtgtcacaactcatagcgctggcttagctatgttagaa
actttaggcttgaaggtgaataaagaacgccgcctttgctctaccttagaagaagtttac
gcttatattgacgaatggactgaaaaacgagctggtttagcttatgatatagatggcatt
gttttgaaattaaacgatttagagcagcaacgccaaatgggaacaaccgccaaatcacct
cgttggtcgattgcttataaatttccagcagaagaagttccaacgaagctactcgacatt
gaattaaatgttggtcgaacaggtgttgttactcccaccgcggtgttagaacctgtccga
gtagctggaactacagtgggtcgggcatcgctccataatgaagatttaattacagaaaaa
gatattcgaattggtgacacggttttaattaaaaaagctggtgatattattccagaagtg
attaaaagcattgcggaagaacgaactggagatgaagagcctttccatatgccagctaac
tgtccaacttgtgggagtgagctagttcggttggaagaagaagtggcgcttagatgtatt
aatcctaaatgtccagcacaaatcaaagaaggtttaattcactttgtttctcgtaatgca
atgaatattgatggacttggtgaaaaagtaattattcaactgtttacgcaccatttaatt
aaagatgtagcagatttgtttttcctttcgaaagagaaactgttagaattagaaagaatg
ggagaaaaatcagtgacgaatttactcgcatcaattgaacaaagtaaacaaaactcacta
gaaaaattattatttggcttaggaattcgccatgttggtgccaaagcggctaaatcactt
gcgatttactttgaaaccatggataaattgaaactagctgataaagaaacgttaaccagg
attaatgatattggtgaaaaaatggcagacagcatcgtcacttattttgcgaatgaagaa
gttcacaacttactagacgaactaaaaagggccggcgtaaatatgacttatacaggacca
aaactagatgatatgtccgaagaagaacttgtttttgcaggaaaaacagtggttctaaca
gggaaattagagcagttaacaagaaacgatgcaaaagccttaatcgagtcacttggcggg
aatgtttccgggagcgtcagtaaaaagacggatgttgttgttgctggcagtgatgctggt
tctaaactcgctaaagcagaagaactagcaattcctatttggtctgaaaatgacttaata
gagtacttaccagacgaaggtggattaaacaaatga
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