Leptospira iowaensis: AB3N60_01060
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Entry
AB3N60_01060 CDS
T10746
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
liow Leptospira iowaensis
Pathway
liow03030
DNA replication
liow03410
Base excision repair
liow03420
Nucleotide excision repair
liow03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
liow00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB3N60_01060 (ligA)
03410 Base excision repair
AB3N60_01060 (ligA)
03420 Nucleotide excision repair
AB3N60_01060 (ligA)
03430 Mismatch repair
AB3N60_01060 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
liow03032
]
AB3N60_01060 (ligA)
03400 DNA repair and recombination proteins [BR:
liow03400
]
AB3N60_01060 (ligA)
Enzymes [BR:
liow01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AB3N60_01060 (ligA)
DNA replication proteins [BR:
liow03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AB3N60_01060 (ligA)
DNA repair and recombination proteins [BR:
liow03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AB3N60_01060 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AB3N60_01060 (ligA)
MMR (mismatch excision repair)
DNA ligase
AB3N60_01060 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AB3N60_01060 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
Nlig-Ia
PTCB-BRCT
DNA_ligase_ZBD
HHH_2
HHH
DUF4332
Motif
Other DBs
NCBI-ProteinID:
XDD46713
LinkDB
All DBs
Position
1:complement(208553..210574)
Genome browser
AA seq
673 aa
AA seq
DB search
MPKKTKTEDPKKRVLELRKEINRHNDLYYKNNAPIITDKEFDLLVKELQKLEKENPLLAD
SSSPTTQVGSDLSPQFSKFKHKVPVLSLENTYNESELSEWLEKTGVEESYSLEWKIDGAS
ILLYYENGKLTQCVTRGSGGIGDIVTENVKTISTIPQTLSEPLNLTVRGEIFMTFADFEE
FNEEYGGKFANPRNLAAGSIKQKDPLEVAKRPLRIFVYDVYFFSSRKGTNTHKDILTLLK
KEKFPLAPDTTVIVGTKLIKEIDSFRKKKDKMPFPVDGLVIKLDSLDLRENLGETSHSPR
WARAFKFDALLKETTIEEIDFAIGRTGKVTPRARVTPISLAGTTVTYATLHNQDYIDQLG
AGIGAKVLISKRGEIIPAVEKVTFPPKTVFVLPAKCPSCNTKLTKVDESVDLFCTNRHCP
ERKLNQLIFFCSKKQMNIEGLGERQIQIFFEKGWVKDIPDIYTLEKFKSNILELDGFGDK
SVKIIFDAIEKSKEKDFRFTLPSIGLNEVGPKVTEILIENGYDSWDKLLTLSKSKTANEE
LTSIHGIGPRTIDALLSHLKDKETLKLVNSLIKLGLKFQADQTEKSDLQPFVGQSWCVTG
SFQNFQPRDLAMDLITKHGGKKVTGVSSKTTHLLYGPGAGSKLDKATELGVKLVTESEFL
DLLKKERIPFNHE
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
ttgcctaaaaaaacaaaaaccgaagatcccaaaaaaagagtattggaacttcgtaaagaa
atcaatcgtcacaatgatttatactataaaaacaatgctcccatcataactgacaaagaa
tttgatttattagtcaaagaactccaaaaattagaaaaagaaaatccactactagctgat
tcctcttcaccgacaacacaagttggatcagacctaagccctcaatttagcaaattcaaa
cacaaagttcccgttttatctttagaaaatacctacaacgaatccgaactttccgaatgg
ttggaaaaaactggtgtagaagaatcgtattctttagaatggaaaatcgatggcgcctca
atcttgttatactatgaaaatggtaaactcacccaatgtgtaacaagaggttctggtgga
atcggtgacattgtcactgaaaatgtaaaaacaatttccactattcctcaaaccctttcg
gaacctttgaacttgactgttcgcggcgaaatatttatgaccttcgctgattttgaagag
tttaatgaagagtatggtggaaaatttgctaatcctagaaatttagcagcaggttctatc
aaacaaaaagaccctctcgaggtcgcaaaacgaccgttacgcatctttgtatacgatgtt
tatttttttagttccagaaagggaaccaatacacataaagatatcttaacacttttaaaa
aaagaaaaattccctcttgcacccgataccactgtgatcgttggaaccaagttaatcaaa
gaaatcgattcctttcgcaaaaaaaaagacaaaatgccgttccccgtggatggactggtc
atcaaattagattccttagatttacgtgaaaatctcggggaaacaagccattccccacgt
tgggcaagagcctttaaatttgatgctcttctcaaagaaaccacaatcgaagaaattgat
tttgccattggtcgtactggtaaagtcacacctcgtgcaagggtaacaccaatctccctt
gcgggtaccacagtcacttatgccaccttacacaaccaagactacattgaccaacttggt
gcaggaattggagcaaaagtactcatctccaaacgtggagaaattatccctgcagtggaa
aaagtaacatttccacccaaaacagtttttgtccttcctgcaaaatgtccttcgtgtaac
actaaattaacgaaagttgatgaatccgttgatttgttttgtaccaatcgtcattgccca
gaacgaaaactaaaccaactcatttttttctgtagcaaaaaacaaatgaacatcgaaggt
cttggtgaaaggcaaattcagattttttttgaaaaaggttgggtaaaagacatacccgat
atatacacattagagaaattcaaatccaacatactagagttagatggatttggtgacaaa
tcagttaaaatcatctttgatgcaatagaaaaatccaaagaaaaagattttcgattcacc
cttccgtcgattggattaaatgaagttggcccaaaagtcacagaaattctcatcgaaaat
ggttatgattcctgggacaaacttctcacattatcaaaatctaaaacagcaaacgaagaa
cttacatccatccatggcattggacctcgtaccatcgatgcattactttcccacctcaaa
gacaaagaaacactaaaactggtaaattctctcatcaaacttgggcttaaattccaagca
gaccaaactgaaaaaagcgacttacaaccatttgttggtcaaagttggtgtgttacgggg
agttttcaaaacttccaaccacgtgacttggcaatggacctcatcacaaaacatggtggt
aaaaaagtaacgggtgtctcatccaaaaccactcacttactctatggccctggtgcaggt
tccaaacttgacaaagcaacagaacttggagtgaaacttgttaccgaatcagagtttttg
gatctattgaaaaaagaaaggatcccattcaaccatgagtaa
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