Qingshengfaniella alkalisoli: FPZ52_05645
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Entry
FPZ52_05645 CDS
T06129
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lit
Qingshengfaniella alkalisoli
Pathway
lit03030
DNA replication
lit03410
Base excision repair
lit03420
Nucleotide excision repair
lit03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FPZ52_05645 (ligA)
03410 Base excision repair
FPZ52_05645 (ligA)
03420 Nucleotide excision repair
FPZ52_05645 (ligA)
03430 Mismatch repair
FPZ52_05645 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lit03032
]
FPZ52_05645 (ligA)
03400 DNA repair and recombination proteins [BR:
lit03400
]
FPZ52_05645 (ligA)
Enzymes [BR:
lit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FPZ52_05645 (ligA)
DNA replication proteins [BR:
lit03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FPZ52_05645 (ligA)
DNA repair and recombination proteins [BR:
lit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FPZ52_05645 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FPZ52_05645 (ligA)
MMR (mismatch excision repair)
DNA ligase
FPZ52_05645 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FPZ52_05645 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QDY69167
UniProt:
A0A5B8J3V8
LinkDB
All DBs
Position
complement(1105721..1107835)
Genome browser
AA seq
704 aa
AA seq
DB search
MREPNVEALTEEQAKAELAELAVKLERADLAYHQDDAPEISDAEYDRLKQRNAAIEDRFP
ALKRLDSPSDQVGAPVAEGFGKITHARRMMSLGNAFDDNDIRDFDRSIRKYLGLPDDAAL
SYVAEPKIDGLSLSLRYEDGRLIHAATRGDGTVGENVTANARTINDIPIEISGAPAIFEV
RGEVYMSHEDFAALNERQEASGQKTFANPRNAAAGSLRQLDSSITASRPLRFFAYSWGEI
SNSFADTQDGAIRALEAFGFSVNPLALHCATVEDLLTHYHKIEEQRASLGYDIDGVVYKV
DDLALQERLGFRSTTPRWAIAHKFPAELAWTQLEAIDIQVGRTGALSPIARLTPITVGGV
VVSNATLHNEDYIAGRDSKGETIRDGKDIRVGDWVQVYRAGDVIPKVADVDLSRRPEGAV
PYTFPEVCPECGSEAIREEGDAVRRCSGGLICPAQAVEKLKHFVSRAAFDIEGLGAKQVE
QFYRDGWIREPADIFTLRDRFGSGMQQLKNREGWGEKSADNLFDAIDRARSVDLDKLIFA
LGIRHVGESASSLLARHYGDWSGFETAMDAVEEGNAVWDDLLSIDGVGAVMATSLVTTMQ
QEAERASIDRLIERLDVQDVAAPDTADSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKV
SGSVSAKTDLLVAGPGAGSKAKKAAELGVETMDEDAWLALIGAT
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
gtgcgggaaccgaatgtcgaagcgctgacagaggaacaggcgaaggcggaactggcggag
ttggctgtaaagctggaacgcgccgatttggcatatcatcaggatgatgcgcccgaaatt
tcggacgcggaatatgaccggctgaaacaacgcaatgccgcgatcgaggatcggttcccc
gcgctgaaacgcctcgacagcccttctgaccaagtcggtgcgccagttgccgaaggtttc
ggcaagatcactcatgcgcgacgcatgatgtcgctgggcaatgcgttcgacgataacgat
atccgcgatttcgaccgttcgatccggaagtatctggggctaccggatgatgcggcgctg
tcctacgtggccgaacccaagatcgatgggttgtcgctgtcgttgcgctatgaagacggc
aggctgatccatgcggctacgcgcggcgacggaacggtgggcgagaacgttaccgcaaat
gcgcgcacgatcaacgacattccgatcgagatcagtggtgccccggcgatcttcgaggtg
cgcggcgaagtctatatgagccacgaggacttcgcggcgctcaacgagcgacaggaagca
tcgggccagaaaacctttgccaacccccgaaacgctgcagcagggtcgctgcggcagttg
gattcgtccatcaccgccagccgtcccttgaggttctttgcctatagttggggcgagatt
tccaatagttttgcggatacgcaggatggtgcgatcagggcgctggaggcgttcggcttt
tcggtcaaccccctggcgctgcactgcgcgacggtcgaggatttgctgacccattaccat
aagatcgaagaacaacgtgcctcgctcggttatgatatcgacggtgtcgtctacaaggtg
gatgaccttgcgttgcaggaacggctgggctttcggtcgaccacaccacgttgggcgatt
gcacataagtttcccgctgaactggcctggacccagcttgaggccatcgacattcaggtg
ggccgcaccggggcgctgtcgcctattgcgcggctgacacccatcacggtcgggggggtg
gtcgtgtccaatgcgacacttcacaatgaggactacatcgcaggccgcgattccaagggc
gaaacgatccgcgatggcaaggacattcgcgtgggtgactgggttcaggtctaccgcgcc
ggcgacgtgatcccgaaggtcgcggatgtggatttgtcgagacgcccggagggtgccgtg
ccttacacctttcctgaagtctgtcccgaatgtggatctgaagccattcgcgaggagggc
gacgccgtgcggcgctgctcgggcgggttgatctgtcccgcgcaggcggtagagaagctg
aagcatttcgtgtcgcgcgcggcgtttgacatcgaagggctgggggccaagcaggtcgaa
cagttctaccgtgacggctggatcagggaaccggcagatattttcacgctgcgcgaccgt
ttcggcagtggcatgcagcagttgaagaaccgcgagggttggggcgagaaatcggcggac
aacctgttcgacgcgattgatcgggcgcgcagcgtcgatttggacaagctgattttcgcg
ttggggatccgccatgtgggcgaaagcgcctccagccttctggcacgccattatggtgat
tggtcaggtttcgagaccgcaatggatgcggtagaagaaggcaacgctgtgtgggatgat
ctgttgtccatcgatggtgtgggagcggtcatggcgacgtcgctggtgaccacgatgcag
caggaagccgagcgcgcatccatcgaccggttgatcgaacgtcttgacgtacaggacgtg
gccgcgccagacaccgcagacagccctgtggcgggcaagacggtcgtgttcaccgggacg
ctggagaagatgacccgcgcagaggccaaggcacgcgccgaagccctgggcgcgaaagtg
tccggatcggtgtcggccaagacggacctcttggttgcggggcccggcgccggatccaag
gcgaagaaggcggcggaactcggtgtcgagaccatggatgaggatgcgtggctggcgctg
atcggcgcaacatga
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integrated database retrieval system
